Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
COL12A1Q99715 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL12A1Q99715 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL12A1Q99715 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL12A1Q99715 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL12A1Q99715 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL12A1Q99715 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.76■□□□□ 0.59
COL12A1Q99715 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL12A1Q99715 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL12A1Q99715 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL12A1Q99715 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL12A1Q99715 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL12A1Q99715 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.76■□□□□ 0.59
COL12A1Q99715 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL12A1Q99715 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL12A1Q99715 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.75■□□□□ 0.59
COL12A1Q99715 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.75■□□□□ 0.59
COL12A1Q99715 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
COL12A1Q99715 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL12A1Q99715 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
COL12A1Q99715 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.75■□□□□ 0.59
COL12A1Q99715 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL12A1Q99715 AC138907.5-202ENST00000569484 235 ntBASIC18.75■□□□□ 0.59
COL12A1Q99715 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL12A1Q99715 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL12A1Q99715 DUSP8P3-201ENST00000399571 1760 ntBASIC18.75■□□□□ 0.59
COL12A1Q99715 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL12A1Q99715 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL12A1Q99715 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC18.75■□□□□ 0.59
COL12A1Q99715 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL12A1Q99715 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.75■□□□□ 0.59
COL12A1Q99715 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.75■□□□□ 0.59
COL12A1Q99715 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.75■□□□□ 0.59
COL12A1Q99715 AC145285.6-201ENST00000604632 637 ntBASIC18.75■□□□□ 0.59
COL12A1Q99715 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.75■□□□□ 0.59
COL12A1Q99715 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL12A1Q99715 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL12A1Q99715 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL12A1Q99715 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL12A1Q99715 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL12A1Q99715 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL12A1Q99715 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.74■□□□□ 0.59
COL12A1Q99715 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL12A1Q99715 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.74■□□□□ 0.59
COL12A1Q99715 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
COL12A1Q99715 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL12A1Q99715 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL12A1Q99715 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL12A1Q99715 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL12A1Q99715 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL12A1Q99715 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL12A1Q99715 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL12A1Q99715 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.73■□□□□ 0.59
COL12A1Q99715 MIR4785-201ENST00000585005 73 ntBASIC18.73■□□□□ 0.59
COL12A1Q99715 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
COL12A1Q99715 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.73■□□□□ 0.59
COL12A1Q99715 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
COL12A1Q99715 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL12A1Q99715 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
COL12A1Q99715 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL12A1Q99715 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.72■□□□□ 0.59
COL12A1Q99715 H19-210ENST00000439725 1929 ntTSL 2 BASIC18.72■□□□□ 0.59
COL12A1Q99715 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL12A1Q99715 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC18.72■□□□□ 0.59
COL12A1Q99715 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
COL12A1Q99715 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL12A1Q99715 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.72■□□□□ 0.59
COL12A1Q99715 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.72■□□□□ 0.59
COL12A1Q99715 AL353708.3-201ENST00000610272 989 ntBASIC18.72■□□□□ 0.59
COL12A1Q99715 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.72■□□□□ 0.59
COL12A1Q99715 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL12A1Q99715 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL12A1Q99715 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL12A1Q99715 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.72■□□□□ 0.59
COL12A1Q99715 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL12A1Q99715 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL12A1Q99715 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL12A1Q99715 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.72■□□□□ 0.59
COL12A1Q99715 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL12A1Q99715 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.72■□□□□ 0.59
COL12A1Q99715 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.72■□□□□ 0.59
COL12A1Q99715 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.72■□□□□ 0.59
COL12A1Q99715 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.72■□□□□ 0.59
COL12A1Q99715 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.72■□□□□ 0.59
COL12A1Q99715 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.72■□□□□ 0.59
COL12A1Q99715 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL12A1Q99715 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL12A1Q99715 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
COL12A1Q99715 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC18.71■□□□□ 0.59
COL12A1Q99715 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL12A1Q99715 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL12A1Q99715 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL12A1Q99715 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.71■□□□□ 0.59
COL12A1Q99715 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL12A1Q99715 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
COL12A1Q99715 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL12A1Q99715 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.71■□□□□ 0.59
COL12A1Q99715 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL12A1Q99715 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL12A1Q99715 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms