Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CDX2Q99626 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
CDX2Q99626 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CDX2Q99626 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
CDX2Q99626 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.56■■□□□ 1.2
CDX2Q99626 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
CDX2Q99626 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC22.56■■□□□ 1.2
CDX2Q99626 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC22.56■■□□□ 1.2
CDX2Q99626 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
CDX2Q99626 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC22.56■■□□□ 1.2
CDX2Q99626 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CDX2Q99626 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC22.56■■□□□ 1.2
CDX2Q99626 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC22.56■■□□□ 1.2
CDX2Q99626 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CDX2Q99626 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CDX2Q99626 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CDX2Q99626 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC22.55■■□□□ 1.2
CDX2Q99626 RNF146-204ENST00000476956 884 ntTSL 2 BASIC22.55■■□□□ 1.2
CDX2Q99626 TK2-204ENST00000525974 1178 ntTSL 2 BASIC22.55■■□□□ 1.2
CDX2Q99626 AL355075.4-201ENST00000554988 638 ntBASIC22.55■■□□□ 1.2
CDX2Q99626 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC22.55■■□□□ 1.2
CDX2Q99626 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC22.55■■□□□ 1.2
CDX2Q99626 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CDX2Q99626 FGF8-207ENST00000618991 856 ntTSL 3 BASIC22.55■■□□□ 1.2
CDX2Q99626 DUSP8P4-201ENST00000399538 1761 ntBASIC22.55■■□□□ 1.2
CDX2Q99626 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CDX2Q99626 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
CDX2Q99626 AP004607.7-201ENST00000527152 1677 ntBASIC22.55■■□□□ 1.2
CDX2Q99626 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CDX2Q99626 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
CDX2Q99626 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC22.54■■□□□ 1.2
CDX2Q99626 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC22.54■■□□□ 1.2
CDX2Q99626 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CDX2Q99626 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC22.54■■□□□ 1.2
CDX2Q99626 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CDX2Q99626 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC22.54■■□□□ 1.2
CDX2Q99626 SOX15-203ENST00000570788 1093 ntBASIC22.54■■□□□ 1.2
CDX2Q99626 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
CDX2Q99626 SNX21-213ENST00000614929 587 ntTSL 5 BASIC22.54■■□□□ 1.2
CDX2Q99626 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CDX2Q99626 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CDX2Q99626 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CDX2Q99626 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.54■■□□□ 1.2
CDX2Q99626 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC22.53■■□□□ 1.2
CDX2Q99626 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CDX2Q99626 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC22.53■■□□□ 1.2
CDX2Q99626 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC22.53■■□□□ 1.2
CDX2Q99626 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CDX2Q99626 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CDX2Q99626 AC008175.2-201ENST00000612840 297 ntBASIC22.53■■□□□ 1.2
CDX2Q99626 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC22.53■■□□□ 1.2
CDX2Q99626 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CDX2Q99626 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CDX2Q99626 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CDX2Q99626 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC22.52■■□□□ 1.2
CDX2Q99626 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CDX2Q99626 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CDX2Q99626 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CDX2Q99626 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CDX2Q99626 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC22.52■■□□□ 1.2
CDX2Q99626 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC22.52■■□□□ 1.2
CDX2Q99626 OR2A1-AS1-207ENST00000486094 819 ntBASIC22.52■■□□□ 1.2
CDX2Q99626 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC22.52■■□□□ 1.2
CDX2Q99626 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CDX2Q99626 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CDX2Q99626 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC22.51■■□□□ 1.19
CDX2Q99626 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CDX2Q99626 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC22.51■■□□□ 1.19
CDX2Q99626 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC22.51■■□□□ 1.19
CDX2Q99626 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC22.51■■□□□ 1.19
CDX2Q99626 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CDX2Q99626 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CDX2Q99626 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC22.51■■□□□ 1.19
CDX2Q99626 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC22.51■■□□□ 1.19
CDX2Q99626 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC22.51■■□□□ 1.19
CDX2Q99626 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
CDX2Q99626 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
CDX2Q99626 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CDX2Q99626 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CDX2Q99626 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.5■■□□□ 1.19
CDX2Q99626 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC22.5■■□□□ 1.19
CDX2Q99626 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC22.5■■□□□ 1.19
CDX2Q99626 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC22.5■■□□□ 1.19
CDX2Q99626 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC22.5■■□□□ 1.19
CDX2Q99626 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CDX2Q99626 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CDX2Q99626 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC22.5■■□□□ 1.19
CDX2Q99626 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.5■■□□□ 1.19
CDX2Q99626 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC22.5■■□□□ 1.19
CDX2Q99626 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CDX2Q99626 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CDX2Q99626 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
CDX2Q99626 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CDX2Q99626 SLC29A4P2-201ENST00000504749 1089 ntBASIC22.49■■□□□ 1.19
CDX2Q99626 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
CDX2Q99626 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC22.49■■□□□ 1.19
CDX2Q99626 AC113410.3-201ENST00000623366 203 ntBASIC22.49■■□□□ 1.19
CDX2Q99626 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC22.49■■□□□ 1.19
CDX2Q99626 AC092865.7-201ENST00000641832 219 ntBASIC22.49■■□□□ 1.19
CDX2Q99626 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms