Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SKA1Q96BD8 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SKA1Q96BD8 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
SKA1Q96BD8 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SKA1Q96BD8 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SKA1Q96BD8 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.07
SKA1Q96BD8 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
SKA1Q96BD8 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
SKA1Q96BD8 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
SKA1Q96BD8 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SKA1Q96BD8 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SKA1Q96BD8 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SKA1Q96BD8 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.7■■□□□ 1.06
SKA1Q96BD8 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SKA1Q96BD8 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.7■■□□□ 1.06
SKA1Q96BD8 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SKA1Q96BD8 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SKA1Q96BD8 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.7■■□□□ 1.06
SKA1Q96BD8 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.7■■□□□ 1.06
SKA1Q96BD8 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SKA1Q96BD8 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.7■■□□□ 1.06
SKA1Q96BD8 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.7■■□□□ 1.06
SKA1Q96BD8 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SKA1Q96BD8 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
SKA1Q96BD8 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SKA1Q96BD8 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
SKA1Q96BD8 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.69■■□□□ 1.06
SKA1Q96BD8 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SKA1Q96BD8 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SKA1Q96BD8 FAM99A-202ENST00000538190 1989 ntBASIC21.69■■□□□ 1.06
SKA1Q96BD8 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.69■■□□□ 1.06
SKA1Q96BD8 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.69■■□□□ 1.06
SKA1Q96BD8 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.69■■□□□ 1.06
SKA1Q96BD8 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SKA1Q96BD8 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SKA1Q96BD8 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.69■■□□□ 1.06
SKA1Q96BD8 TPRG1LP1-201ENST00000598702 760 ntBASIC21.69■■□□□ 1.06
SKA1Q96BD8 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SKA1Q96BD8 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SKA1Q96BD8 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
SKA1Q96BD8 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.69■■□□□ 1.06
SKA1Q96BD8 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.69■■□□□ 1.06
SKA1Q96BD8 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SKA1Q96BD8 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.69■■□□□ 1.06
SKA1Q96BD8 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
SKA1Q96BD8 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
SKA1Q96BD8 AL353803.4-201ENST00000565882 1934 ntBASIC21.68■■□□□ 1.06
SKA1Q96BD8 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SKA1Q96BD8 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SKA1Q96BD8 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.68■■□□□ 1.06
SKA1Q96BD8 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.68■■□□□ 1.06
SKA1Q96BD8 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.68■■□□□ 1.06
SKA1Q96BD8 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.68■■□□□ 1.06
SKA1Q96BD8 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SKA1Q96BD8 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.68■■□□□ 1.06
SKA1Q96BD8 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SKA1Q96BD8 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SKA1Q96BD8 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SKA1Q96BD8 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SKA1Q96BD8 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
SKA1Q96BD8 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SKA1Q96BD8 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
SKA1Q96BD8 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.67■■□□□ 1.06
SKA1Q96BD8 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SKA1Q96BD8 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
SKA1Q96BD8 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.67■■□□□ 1.06
SKA1Q96BD8 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SKA1Q96BD8 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SKA1Q96BD8 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SKA1Q96BD8 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.67■■□□□ 1.06
SKA1Q96BD8 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.67■■□□□ 1.06
SKA1Q96BD8 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SKA1Q96BD8 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.67■■□□□ 1.06
SKA1Q96BD8 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.67■■□□□ 1.06
SKA1Q96BD8 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.67■■□□□ 1.06
SKA1Q96BD8 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.67■■□□□ 1.06
SKA1Q96BD8 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SKA1Q96BD8 AC010542.4-201ENST00000563151 1910 ntBASIC21.67■■□□□ 1.06
SKA1Q96BD8 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SKA1Q96BD8 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SKA1Q96BD8 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SKA1Q96BD8 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SKA1Q96BD8 KRT19P1-201ENST00000405746 1186 ntBASIC21.66■■□□□ 1.06
SKA1Q96BD8 AC080038.1-201ENST00000611274 1154 ntBASIC21.66■■□□□ 1.06
SKA1Q96BD8 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.66■■□□□ 1.06
SKA1Q96BD8 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SKA1Q96BD8 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SKA1Q96BD8 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SKA1Q96BD8 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SKA1Q96BD8 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
SKA1Q96BD8 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SKA1Q96BD8 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SKA1Q96BD8 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SKA1Q96BD8 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SKA1Q96BD8 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.65■■□□□ 1.06
SKA1Q96BD8 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
SKA1Q96BD8 AC006015.1-201ENST00000429970 570 ntBASIC21.65■■□□□ 1.06
SKA1Q96BD8 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.65■■□□□ 1.06
SKA1Q96BD8 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
SKA1Q96BD8 AC073130.3-201ENST00000624389 2278 ntBASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms