Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 PARP1-210ENST00000629232 477 ntTSL 5 BASIC25.25■■□□□ 1.63
NKX2-3Q8TAU0 CPT2-209ENST00000636935 803 ntTSL 5 BASIC25.25■■□□□ 1.63
NKX2-3Q8TAU0 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
NKX2-3Q8TAU0 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
NKX2-3Q8TAU0 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC25.25■■□□□ 1.63
NKX2-3Q8TAU0 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
NKX2-3Q8TAU0 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
NKX2-3Q8TAU0 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 AC009237.3-201ENST00000393279 1427 ntBASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 WWOX-218ENST00000627394 894 ntTSL 5 BASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC25.24■■□□□ 1.63
NKX2-3Q8TAU0 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 COX20-201ENST00000366528 568 ntTSL 2 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC25.23■■□□□ 1.63
NKX2-3Q8TAU0 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
NKX2-3Q8TAU0 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
NKX2-3Q8TAU0 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
NKX2-3Q8TAU0 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
NKX2-3Q8TAU0 C11orf96-202ENST00000528572 1834 ntBASIC25.22■■□□□ 1.63
NKX2-3Q8TAU0 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
NKX2-3Q8TAU0 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
NKX2-3Q8TAU0 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
NKX2-3Q8TAU0 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC25.22■■□□□ 1.63
NKX2-3Q8TAU0 MDK-213ENST00000617138 635 ntTSL 2 BASIC25.22■■□□□ 1.63
NKX2-3Q8TAU0 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
NKX2-3Q8TAU0 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
NKX2-3Q8TAU0 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
NKX2-3Q8TAU0 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
NKX2-3Q8TAU0 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
NKX2-3Q8TAU0 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC25.21■■□□□ 1.63
NKX2-3Q8TAU0 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
NKX2-3Q8TAU0 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
NKX2-3Q8TAU0 APTR-205ENST00000447009 902 ntTSL 2 BASIC25.21■■□□□ 1.63
NKX2-3Q8TAU0 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC25.21■■□□□ 1.63
NKX2-3Q8TAU0 AC142086.2-201ENST00000569753 217 ntBASIC25.21■■□□□ 1.63
NKX2-3Q8TAU0 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC25.21■■□□□ 1.63
NKX2-3Q8TAU0 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC25.21■■□□□ 1.63
NKX2-3Q8TAU0 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC25.21■■□□□ 1.63
NKX2-3Q8TAU0 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
NKX2-3Q8TAU0 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
NKX2-3Q8TAU0 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
NKX2-3Q8TAU0 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
NKX2-3Q8TAU0 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC25.2■■□□□ 1.63
NKX2-3Q8TAU0 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
NKX2-3Q8TAU0 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
NKX2-3Q8TAU0 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC25.2■■□□□ 1.62
NKX2-3Q8TAU0 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC25.2■■□□□ 1.62
NKX2-3Q8TAU0 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC25.2■■□□□ 1.62
NKX2-3Q8TAU0 KRT19P1-201ENST00000405746 1186 ntBASIC25.2■■□□□ 1.62
NKX2-3Q8TAU0 KRT18P11-201ENST00000435214 1283 ntBASIC25.2■■□□□ 1.62
NKX2-3Q8TAU0 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC25.2■■□□□ 1.62
NKX2-3Q8TAU0 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC25.2■■□□□ 1.62
NKX2-3Q8TAU0 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
NKX2-3Q8TAU0 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
NKX2-3Q8TAU0 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC25.19■■□□□ 1.62
NKX2-3Q8TAU0 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC25.19■■□□□ 1.62
NKX2-3Q8TAU0 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
NKX2-3Q8TAU0 MIR663A-201ENST00000385250 93 ntBASIC25.19■■□□□ 1.62
NKX2-3Q8TAU0 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC25.19■■□□□ 1.62
NKX2-3Q8TAU0 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC25.19■■□□□ 1.62
NKX2-3Q8TAU0 WT1-AS_3.1-201ENST00000613262 234 ntBASIC25.19■■□□□ 1.62
NKX2-3Q8TAU0 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
NKX2-3Q8TAU0 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
NKX2-3Q8TAU0 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC25.19■■□□□ 1.62
NKX2-3Q8TAU0 LINC00565-201ENST00000562710 2331 ntBASIC25.19■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms