Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SLC44A3Q8N4M1 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SLC44A3Q8N4M1 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
SLC44A3Q8N4M1 POU5F1P4-201ENST00000413175 1085 ntBASIC21.86■■□□□ 1.09
SLC44A3Q8N4M1 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
SLC44A3Q8N4M1 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.86■■□□□ 1.09
SLC44A3Q8N4M1 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.86■■□□□ 1.09
SLC44A3Q8N4M1 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SLC44A3Q8N4M1 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.86■■□□□ 1.09
SLC44A3Q8N4M1 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SLC44A3Q8N4M1 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SLC44A3Q8N4M1 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.85■■□□□ 1.09
SLC44A3Q8N4M1 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SLC44A3Q8N4M1 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
SLC44A3Q8N4M1 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.85■■□□□ 1.09
SLC44A3Q8N4M1 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.85■■□□□ 1.09
SLC44A3Q8N4M1 AC026366.1-201ENST00000488803 879 ntBASIC21.85■■□□□ 1.09
SLC44A3Q8N4M1 RBM17P2-201ENST00000616397 1405 ntBASIC21.85■■□□□ 1.09
SLC44A3Q8N4M1 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SLC44A3Q8N4M1 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SLC44A3Q8N4M1 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.85■■□□□ 1.09
SLC44A3Q8N4M1 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SLC44A3Q8N4M1 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SLC44A3Q8N4M1 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 UNC93B5-201ENST00000530315 699 ntBASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SLC44A3Q8N4M1 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SLC44A3Q8N4M1 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
SLC44A3Q8N4M1 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
SLC44A3Q8N4M1 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SLC44A3Q8N4M1 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SLC44A3Q8N4M1 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SLC44A3Q8N4M1 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SLC44A3Q8N4M1 UNC93B4-201ENST00000505679 747 ntBASIC21.83■■□□□ 1.09
SLC44A3Q8N4M1 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
SLC44A3Q8N4M1 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.83■■□□□ 1.09
SLC44A3Q8N4M1 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.83■■□□□ 1.09
SLC44A3Q8N4M1 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SLC44A3Q8N4M1 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SLC44A3Q8N4M1 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SLC44A3Q8N4M1 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SLC44A3Q8N4M1 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.82■■□□□ 1.08
SLC44A3Q8N4M1 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.82■■□□□ 1.08
SLC44A3Q8N4M1 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.82■■□□□ 1.08
SLC44A3Q8N4M1 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC21.82■■□□□ 1.08
SLC44A3Q8N4M1 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.82■■□□□ 1.08
SLC44A3Q8N4M1 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.82■■□□□ 1.08
SLC44A3Q8N4M1 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SLC44A3Q8N4M1 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.82■■□□□ 1.08
SLC44A3Q8N4M1 AC073648.6-201ENST00000641589 218 ntBASIC21.82■■□□□ 1.08
SLC44A3Q8N4M1 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.82■■□□□ 1.08
SLC44A3Q8N4M1 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
SLC44A3Q8N4M1 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 KRT16P2-201ENST00000414673 1423 ntBASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.8■■□□□ 1.08
SLC44A3Q8N4M1 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms