Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13CQ709C8 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13CQ709C8 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.84■□□□□ 0.45
VPS13CQ709C8 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.84■□□□□ 0.45
VPS13CQ709C8 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13CQ709C8 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.83■□□□□ 0.45
VPS13CQ709C8 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
VPS13CQ709C8 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS13CQ709C8 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.45
VPS13CQ709C8 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VPS13CQ709C8 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13CQ709C8 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13CQ709C8 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13CQ709C8 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13CQ709C8 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.83■□□□□ 0.44
VPS13CQ709C8 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13CQ709C8 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC17.83■□□□□ 0.44
VPS13CQ709C8 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
VPS13CQ709C8 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VPS13CQ709C8 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13CQ709C8 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13CQ709C8 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
VPS13CQ709C8 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.82■□□□□ 0.44
VPS13CQ709C8 OR10C1-204ENST00000622521 1039 ntBASIC17.82■□□□□ 0.44
VPS13CQ709C8 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13CQ709C8 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VPS13CQ709C8 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13CQ709C8 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13CQ709C8 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13CQ709C8 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VPS13CQ709C8 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS13CQ709C8 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS13CQ709C8 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.81■□□□□ 0.44
VPS13CQ709C8 AC010141.2-201ENST00000452426 721 ntBASIC17.81■□□□□ 0.44
VPS13CQ709C8 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
VPS13CQ709C8 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
VPS13CQ709C8 CREM-210ENST00000374721 2020 ntTSL 5 BASIC17.81■□□□□ 0.44
VPS13CQ709C8 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13CQ709C8 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13CQ709C8 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13CQ709C8 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.81■□□□□ 0.44
VPS13CQ709C8 Z99916.2-201ENST00000604037 246 ntBASIC17.81■□□□□ 0.44
VPS13CQ709C8 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
VPS13CQ709C8 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13CQ709C8 AC092068.2-201ENST00000590491 1708 ntBASIC17.81■□□□□ 0.44
VPS13CQ709C8 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VPS13CQ709C8 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.81■□□□□ 0.44
VPS13CQ709C8 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.81■□□□□ 0.44
VPS13CQ709C8 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13CQ709C8 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13CQ709C8 AC010980.2-201ENST00000587099 1412 ntBASIC17.8■□□□□ 0.44
VPS13CQ709C8 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13CQ709C8 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS13CQ709C8 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS13CQ709C8 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.8■□□□□ 0.44
VPS13CQ709C8 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.8■□□□□ 0.44
VPS13CQ709C8 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13CQ709C8 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13CQ709C8 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
VPS13CQ709C8 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13CQ709C8 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13CQ709C8 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13CQ709C8 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS13CQ709C8 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13CQ709C8 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS13CQ709C8 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13CQ709C8 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VPS13CQ709C8 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS13CQ709C8 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS13CQ709C8 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13CQ709C8 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13CQ709C8 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.79■□□□□ 0.44
VPS13CQ709C8 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC17.79■□□□□ 0.44
VPS13CQ709C8 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS13CQ709C8 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13CQ709C8 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13CQ709C8 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13CQ709C8 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13CQ709C8 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13CQ709C8 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13CQ709C8 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS13CQ709C8 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
VPS13CQ709C8 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.79■□□□□ 0.44
VPS13CQ709C8 AC010331.1-201ENST00000611423 582 ntBASIC17.79■□□□□ 0.44
VPS13CQ709C8 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13CQ709C8 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13CQ709C8 ANOS2P-203ENST00000472227 1816 ntBASIC17.79■□□□□ 0.44
VPS13CQ709C8 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13CQ709C8 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13CQ709C8 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.79■□□□□ 0.44
VPS13CQ709C8 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.79■□□□□ 0.44
VPS13CQ709C8 BX088651.1-201ENST00000540551 451 ntBASIC17.79■□□□□ 0.44
VPS13CQ709C8 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VPS13CQ709C8 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13CQ709C8 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
VPS13CQ709C8 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS13CQ709C8 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS13CQ709C8 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS13CQ709C8 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
VPS13CQ709C8 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms