Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC58Q4VC31 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC18.88■□□□□ 0.61
CCDC58Q4VC31 OXCT2P1-201ENST00000447263 1535 ntBASIC18.88■□□□□ 0.61
CCDC58Q4VC31 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC58Q4VC31 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC58Q4VC31 LINC01521-201ENST00000504184 1943 ntBASIC18.88■□□□□ 0.61
CCDC58Q4VC31 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CCDC58Q4VC31 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC58Q4VC31 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC58Q4VC31 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC58Q4VC31 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC58Q4VC31 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC58Q4VC31 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC58Q4VC31 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.87■□□□□ 0.61
CCDC58Q4VC31 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CCDC58Q4VC31 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC58Q4VC31 AC068587.7-201ENST00000641602 218 ntBASIC18.87■□□□□ 0.61
CCDC58Q4VC31 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC58Q4VC31 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC58Q4VC31 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC58Q4VC31 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC58Q4VC31 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 AC026471.6-201ENST00000622954 1905 ntBASIC18.86■□□□□ 0.61
CCDC58Q4VC31 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.86■□□□□ 0.61
CCDC58Q4VC31 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 AC010997.5-201ENST00000609182 354 ntBASIC18.85■□□□□ 0.61
CCDC58Q4VC31 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC58Q4VC31 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.84■□□□□ 0.61
CCDC58Q4VC31 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC58Q4VC31 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC58Q4VC31 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC58Q4VC31 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC58Q4VC31 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC58Q4VC31 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC58Q4VC31 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC58Q4VC31 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC58Q4VC31 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC58Q4VC31 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC58Q4VC31 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC58Q4VC31 AC133637.1-201ENST00000624115 1537 ntBASIC18.84■□□□□ 0.61
CCDC58Q4VC31 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC58Q4VC31 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC58Q4VC31 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.83■□□□□ 0.61
CCDC58Q4VC31 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC58Q4VC31 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC58Q4VC31 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
CCDC58Q4VC31 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CCDC58Q4VC31 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC58Q4VC31 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC58Q4VC31 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC58Q4VC31 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC58Q4VC31 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC58Q4VC31 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC58Q4VC31 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC58Q4VC31 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.6
CCDC58Q4VC31 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.83■□□□□ 0.6
CCDC58Q4VC31 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC58Q4VC31 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CCDC58Q4VC31 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC58Q4VC31 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms