Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTCHD3Q3KNS1 AP006587.3-201ENST00000525742 1516 ntBASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.73■□□□□ 0.91
PTCHD3Q3KNS1 LINC02228-203ENST00000641970 1355 ntBASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 AC003102.1-202ENST00000563394 1796 ntBASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
PTCHD3Q3KNS1 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PTCHD3Q3KNS1 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.71■□□□□ 0.91
PTCHD3Q3KNS1 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.71■□□□□ 0.91
PTCHD3Q3KNS1 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.71■□□□□ 0.91
PTCHD3Q3KNS1 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.71■□□□□ 0.91
PTCHD3Q3KNS1 KRT18P14-201ENST00000534205 1250 ntBASIC20.71■□□□□ 0.91
PTCHD3Q3KNS1 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.71■□□□□ 0.91
PTCHD3Q3KNS1 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTCHD3Q3KNS1 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PTCHD3Q3KNS1 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
PTCHD3Q3KNS1 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTCHD3Q3KNS1 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTCHD3Q3KNS1 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
PTCHD3Q3KNS1 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
PTCHD3Q3KNS1 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.7■□□□□ 0.91
PTCHD3Q3KNS1 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 IKBKGP1-201ENST00000612193 1073 ntBASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PTCHD3Q3KNS1 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 BX005040.4-201ENST00000637145 1518 ntBASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 TERF1P2-201ENST00000583350 1212 ntBASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 AC022517.1-201ENST00000592429 346 ntBASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 AC009237.3-201ENST00000393279 1427 ntBASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTCHD3Q3KNS1 AC026310.3-201ENST00000625186 2373 ntBASIC20.68■□□□□ 0.9
PTCHD3Q3KNS1 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTCHD3Q3KNS1 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.68■□□□□ 0.9
PTCHD3Q3KNS1 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
PTCHD3Q3KNS1 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
PTCHD3Q3KNS1 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.68■□□□□ 0.9
PTCHD3Q3KNS1 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTCHD3Q3KNS1 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PTCHD3Q3KNS1 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms