Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NKX3-2P78367 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NKX3-2P78367 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
NKX3-2P78367 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NKX3-2P78367 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NKX3-2P78367 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC23.63■■□□□ 1.37
NKX3-2P78367 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23.62■■□□□ 1.37
NKX3-2P78367 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NKX3-2P78367 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
NKX3-2P78367 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NKX3-2P78367 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC23.62■■□□□ 1.37
NKX3-2P78367 GAS7-202ENST00000396115 929 ntTSL 5 BASIC23.62■■□□□ 1.37
NKX3-2P78367 DUSP5P2-201ENST00000426873 1033 ntBASIC23.62■■□□□ 1.37
NKX3-2P78367 RPS2P52-201ENST00000469610 820 ntBASIC23.62■■□□□ 1.37
NKX3-2P78367 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC23.62■■□□□ 1.37
NKX3-2P78367 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.62■■□□□ 1.37
NKX3-2P78367 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.62■■□□□ 1.37
NKX3-2P78367 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NKX3-2P78367 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NKX3-2P78367 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NKX3-2P78367 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
NKX3-2P78367 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC23.61■■□□□ 1.37
NKX3-2P78367 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.61■■□□□ 1.37
NKX3-2P78367 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NKX3-2P78367 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
NKX3-2P78367 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
NKX3-2P78367 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
NKX3-2P78367 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
NKX3-2P78367 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
NKX3-2P78367 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.61■■□□□ 1.37
NKX3-2P78367 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NKX3-2P78367 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NKX3-2P78367 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
NKX3-2P78367 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
NKX3-2P78367 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
NKX3-2P78367 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
NKX3-2P78367 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
NKX3-2P78367 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.6■■□□□ 1.37
NKX3-2P78367 MMAB-206ENST00000540016 945 ntTSL 3 BASIC23.6■■□□□ 1.37
NKX3-2P78367 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
NKX3-2P78367 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.6■■□□□ 1.37
NKX3-2P78367 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
NKX3-2P78367 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
NKX3-2P78367 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
NKX3-2P78367 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
NKX3-2P78367 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
NKX3-2P78367 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
NKX3-2P78367 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
NKX3-2P78367 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC23.59■■□□□ 1.37
NKX3-2P78367 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC23.59■■□□□ 1.37
NKX3-2P78367 RARG-204ENST00000543726 1779 ntTSL 2 BASIC23.59■■□□□ 1.37
NKX3-2P78367 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC23.59■■□□□ 1.37
NKX3-2P78367 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
NKX3-2P78367 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC23.58■■□□□ 1.37
NKX3-2P78367 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC23.58■■□□□ 1.37
NKX3-2P78367 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC23.58■■□□□ 1.37
NKX3-2P78367 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC23.58■■□□□ 1.37
NKX3-2P78367 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
NKX3-2P78367 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
NKX3-2P78367 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NKX3-2P78367 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC23.57■■□□□ 1.36
NKX3-2P78367 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
NKX3-2P78367 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NKX3-2P78367 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
NKX3-2P78367 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC23.57■■□□□ 1.36
NKX3-2P78367 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC23.57■■□□□ 1.36
NKX3-2P78367 IRX5-204ENST00000560154 879 ntTSL 5 BASIC23.57■■□□□ 1.36
NKX3-2P78367 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC23.57■■□□□ 1.36
NKX3-2P78367 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC23.57■■□□□ 1.36
NKX3-2P78367 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC23.57■■□□□ 1.36
NKX3-2P78367 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NKX3-2P78367 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NKX3-2P78367 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NKX3-2P78367 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
NKX3-2P78367 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NKX3-2P78367 AC061975.6-201ENST00000579045 1553 ntBASIC23.57■■□□□ 1.36
NKX3-2P78367 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
NKX3-2P78367 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
NKX3-2P78367 AC139530.1-201ENST00000575312 1977 ntBASIC23.56■■□□□ 1.36
NKX3-2P78367 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
NKX3-2P78367 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
NKX3-2P78367 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
NKX3-2P78367 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
NKX3-2P78367 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC23.56■■□□□ 1.36
NKX3-2P78367 UNC93B5-201ENST00000530315 699 ntBASIC23.56■■□□□ 1.36
NKX3-2P78367 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC23.56■■□□□ 1.36
NKX3-2P78367 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC23.56■■□□□ 1.36
NKX3-2P78367 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC23.56■■□□□ 1.36
NKX3-2P78367 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC23.56■■□□□ 1.36
NKX3-2P78367 INO80E-214ENST00000620599 515 ntTSL 2 BASIC23.56■■□□□ 1.36
NKX3-2P78367 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NKX3-2P78367 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NKX3-2P78367 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NKX3-2P78367 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NKX3-2P78367 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NKX3-2P78367 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NKX3-2P78367 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NKX3-2P78367 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
NKX3-2P78367 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
NKX3-2P78367 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms