Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
PKNOX1P55347 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.75■□□□□ 0.91
PKNOX1P55347 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.75■□□□□ 0.91
PKNOX1P55347 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.75■□□□□ 0.91
PKNOX1P55347 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.75■□□□□ 0.91
PKNOX1P55347 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PKNOX1P55347 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.75■□□□□ 0.91
PKNOX1P55347 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PKNOX1P55347 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.75■□□□□ 0.91
PKNOX1P55347 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
PKNOX1P55347 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
PKNOX1P55347 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.75■□□□□ 0.91
PKNOX1P55347 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PKNOX1P55347 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PKNOX1P55347 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PKNOX1P55347 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PKNOX1P55347 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PKNOX1P55347 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PKNOX1P55347 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PKNOX1P55347 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PKNOX1P55347 SLC47A1P1-202ENST00000449666 945 ntBASIC20.74■□□□□ 0.91
PKNOX1P55347 AC131281.2-201ENST00000520478 145 ntBASIC20.74■□□□□ 0.91
PKNOX1P55347 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PKNOX1P55347 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
PKNOX1P55347 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.74■□□□□ 0.91
PKNOX1P55347 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PKNOX1P55347 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
PKNOX1P55347 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PKNOX1P55347 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
PKNOX1P55347 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PKNOX1P55347 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PKNOX1P55347 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
PKNOX1P55347 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PKNOX1P55347 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.73■□□□□ 0.91
PKNOX1P55347 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PKNOX1P55347 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
PKNOX1P55347 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PKNOX1P55347 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PKNOX1P55347 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PKNOX1P55347 FEM1AP4-201ENST00000443167 1987 ntBASIC20.73■□□□□ 0.91
PKNOX1P55347 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.73■□□□□ 0.91
PKNOX1P55347 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.73■□□□□ 0.91
PKNOX1P55347 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
PKNOX1P55347 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PKNOX1P55347 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
PKNOX1P55347 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
PKNOX1P55347 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
PKNOX1P55347 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
PKNOX1P55347 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PKNOX1P55347 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
PKNOX1P55347 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
PKNOX1P55347 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
PKNOX1P55347 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.72■□□□□ 0.91
PKNOX1P55347 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PKNOX1P55347 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PKNOX1P55347 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
PKNOX1P55347 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
PKNOX1P55347 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PKNOX1P55347 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.71■□□□□ 0.91
PKNOX1P55347 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.71■□□□□ 0.91
PKNOX1P55347 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PKNOX1P55347 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PKNOX1P55347 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.71■□□□□ 0.91
PKNOX1P55347 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.71■□□□□ 0.91
PKNOX1P55347 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PKNOX1P55347 AP004607.7-201ENST00000527152 1677 ntBASIC20.7■□□□□ 0.91
PKNOX1P55347 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PKNOX1P55347 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.7■□□□□ 0.9
PKNOX1P55347 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.7■□□□□ 0.9
PKNOX1P55347 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
PKNOX1P55347 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PKNOX1P55347 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PKNOX1P55347 AC092667.1-201ENST00000434301 2586 ntBASIC20.7■□□□□ 0.9
PKNOX1P55347 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
PKNOX1P55347 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.69■□□□□ 0.9
PKNOX1P55347 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.69■□□□□ 0.9
PKNOX1P55347 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.69■□□□□ 0.9
PKNOX1P55347 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
PKNOX1P55347 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.69■□□□□ 0.9
PKNOX1P55347 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PKNOX1P55347 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
PKNOX1P55347 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PKNOX1P55347 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.68■□□□□ 0.9
PKNOX1P55347 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PKNOX1P55347 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms