Protein–RNA interactions for Protein: P55055

NR1H2, Oxysterols receptor LXR-beta, humanhuman

Predictions only

Length 460 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H2P55055 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
NR1H2P55055 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
NR1H2P55055 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NR1H2P55055 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
NR1H2P55055 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
NR1H2P55055 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NR1H2P55055 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.96■□□□□ 0.79
NR1H2P55055 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NR1H2P55055 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.96■□□□□ 0.79
NR1H2P55055 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.96■□□□□ 0.79
NR1H2P55055 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.96■□□□□ 0.79
NR1H2P55055 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NR1H2P55055 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NR1H2P55055 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NR1H2P55055 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.95■□□□□ 0.78
NR1H2P55055 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NR1H2P55055 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
NR1H2P55055 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.95■□□□□ 0.78
NR1H2P55055 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
NR1H2P55055 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NR1H2P55055 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.95■□□□□ 0.78
NR1H2P55055 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.95■□□□□ 0.78
NR1H2P55055 AC005837.3-201ENST00000612163 286 ntBASIC19.95■□□□□ 0.78
NR1H2P55055 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NR1H2P55055 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
NR1H2P55055 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NR1H2P55055 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NR1H2P55055 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.95■□□□□ 0.78
NR1H2P55055 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NR1H2P55055 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NR1H2P55055 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
NR1H2P55055 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NR1H2P55055 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NR1H2P55055 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.94■□□□□ 0.78
NR1H2P55055 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.94■□□□□ 0.78
NR1H2P55055 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NR1H2P55055 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
NR1H2P55055 AL020996.1-203ENST00000536896 2307 ntBASIC19.94■□□□□ 0.78
NR1H2P55055 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.94■□□□□ 0.78
NR1H2P55055 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.94■□□□□ 0.78
NR1H2P55055 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NR1H2P55055 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
NR1H2P55055 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NR1H2P55055 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
NR1H2P55055 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NR1H2P55055 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.93■□□□□ 0.78
NR1H2P55055 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NR1H2P55055 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
NR1H2P55055 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
NR1H2P55055 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.93■□□□□ 0.78
NR1H2P55055 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.93■□□□□ 0.78
NR1H2P55055 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.93■□□□□ 0.78
NR1H2P55055 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NR1H2P55055 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NR1H2P55055 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NR1H2P55055 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
NR1H2P55055 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NR1H2P55055 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.93■□□□□ 0.78
NR1H2P55055 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.93■□□□□ 0.78
NR1H2P55055 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NR1H2P55055 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NR1H2P55055 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.92■□□□□ 0.78
NR1H2P55055 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NR1H2P55055 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NR1H2P55055 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NR1H2P55055 AC106739.1-201ENST00000617035 715 ntBASIC19.92■□□□□ 0.78
NR1H2P55055 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NR1H2P55055 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.92■□□□□ 0.78
NR1H2P55055 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
NR1H2P55055 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.92■□□□□ 0.78
NR1H2P55055 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NR1H2P55055 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NR1H2P55055 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.92■□□□□ 0.78
NR1H2P55055 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.92■□□□□ 0.78
NR1H2P55055 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NR1H2P55055 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
NR1H2P55055 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
NR1H2P55055 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NR1H2P55055 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.91■□□□□ 0.78
NR1H2P55055 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
NR1H2P55055 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NR1H2P55055 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NR1H2P55055 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.91■□□□□ 0.78
NR1H2P55055 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NR1H2P55055 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NR1H2P55055 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
NR1H2P55055 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NR1H2P55055 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NR1H2P55055 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.91■□□□□ 0.78
NR1H2P55055 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NR1H2P55055 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
NR1H2P55055 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NR1H2P55055 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
NR1H2P55055 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
NR1H2P55055 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.91■□□□□ 0.78
NR1H2P55055 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
NR1H2P55055 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NR1H2P55055 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NR1H2P55055 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.9■□□□□ 0.78
NR1H2P55055 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms