Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 RBM17P2-201ENST00000616397 1405 ntBASIC24.65■■□□□ 1.54
HMGCS2P54868 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC24.65■■□□□ 1.54
HMGCS2P54868 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC24.65■■□□□ 1.54
HMGCS2P54868 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
HMGCS2P54868 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
HMGCS2P54868 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC24.64■■□□□ 1.54
HMGCS2P54868 KRT18P29-201ENST00000397031 1267 ntBASIC24.64■■□□□ 1.54
HMGCS2P54868 AC093827.2-201ENST00000512654 315 ntBASIC24.64■■□□□ 1.54
HMGCS2P54868 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
HMGCS2P54868 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC24.64■■□□□ 1.53
HMGCS2P54868 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC24.64■■□□□ 1.53
HMGCS2P54868 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGCS2P54868 KRT16P2-201ENST00000414673 1423 ntBASIC24.63■■□□□ 1.53
HMGCS2P54868 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
HMGCS2P54868 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC24.63■■□□□ 1.53
HMGCS2P54868 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGCS2P54868 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGCS2P54868 PRORSD1P-201ENST00000295112 541 ntBASIC24.63■■□□□ 1.53
HMGCS2P54868 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGCS2P54868 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
HMGCS2P54868 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC24.63■■□□□ 1.53
HMGCS2P54868 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC24.63■■□□□ 1.53
HMGCS2P54868 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC24.63■■□□□ 1.53
HMGCS2P54868 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC24.63■■□□□ 1.53
HMGCS2P54868 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
HMGCS2P54868 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC24.63■■□□□ 1.53
HMGCS2P54868 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGCS2P54868 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC24.63■■□□□ 1.53
HMGCS2P54868 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
HMGCS2P54868 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
HMGCS2P54868 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGCS2P54868 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
HMGCS2P54868 RARG-204ENST00000543726 1779 ntTSL 2 BASIC24.62■■□□□ 1.53
HMGCS2P54868 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
HMGCS2P54868 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
HMGCS2P54868 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
HMGCS2P54868 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC24.62■■□□□ 1.53
HMGCS2P54868 RARRES2P4-201ENST00000514074 484 ntBASIC24.62■■□□□ 1.53
HMGCS2P54868 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
HMGCS2P54868 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
HMGCS2P54868 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC24.62■■□□□ 1.53
HMGCS2P54868 AC061975.6-201ENST00000579045 1553 ntBASIC24.62■■□□□ 1.53
HMGCS2P54868 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
HMGCS2P54868 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
HMGCS2P54868 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
HMGCS2P54868 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC24.61■■□□□ 1.53
HMGCS2P54868 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
HMGCS2P54868 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
HMGCS2P54868 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC24.61■■□□□ 1.53
HMGCS2P54868 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
HMGCS2P54868 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
HMGCS2P54868 AL591742.1-201ENST00000604433 565 ntBASIC24.61■■□□□ 1.53
HMGCS2P54868 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC24.61■■□□□ 1.53
HMGCS2P54868 MYC-209ENST00000641252 345 ntBASIC24.61■■□□□ 1.53
HMGCS2P54868 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC24.61■■□□□ 1.53
HMGCS2P54868 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC24.61■■□□□ 1.53
HMGCS2P54868 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC24.61■■□□□ 1.53
HMGCS2P54868 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
HMGCS2P54868 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC24.61■■□□□ 1.53
HMGCS2P54868 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC24.6■■□□□ 1.53
HMGCS2P54868 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
HMGCS2P54868 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
HMGCS2P54868 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
HMGCS2P54868 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC24.6■■□□□ 1.53
HMGCS2P54868 RHEB-204ENST00000472642 900 ntTSL 3 BASIC24.6■■□□□ 1.53
HMGCS2P54868 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC24.6■■□□□ 1.53
HMGCS2P54868 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC24.6■■□□□ 1.53
HMGCS2P54868 AC010980.2-201ENST00000587099 1412 ntBASIC24.6■■□□□ 1.53
HMGCS2P54868 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
HMGCS2P54868 LTK-203ENST00000453182 2412 ntTSL 2 BASIC24.6■■□□□ 1.53
HMGCS2P54868 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
HMGCS2P54868 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
HMGCS2P54868 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
HMGCS2P54868 AC097658.1-201ENST00000475555 843 ntBASIC24.59■■□□□ 1.53
HMGCS2P54868 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC24.59■■□□□ 1.53
HMGCS2P54868 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC24.59■■□□□ 1.53
HMGCS2P54868 ISCU-212ENST00000547005 795 ntTSL 3 BASIC24.59■■□□□ 1.53
HMGCS2P54868 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC24.59■■□□□ 1.53
HMGCS2P54868 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC24.59■■□□□ 1.53
HMGCS2P54868 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
HMGCS2P54868 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC24.59■■□□□ 1.53
HMGCS2P54868 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
HMGCS2P54868 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
HMGCS2P54868 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
HMGCS2P54868 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC24.59■■□□□ 1.53
HMGCS2P54868 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
HMGCS2P54868 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
HMGCS2P54868 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC24.59■■□□□ 1.53
HMGCS2P54868 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
HMGCS2P54868 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
HMGCS2P54868 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC24.58■■□□□ 1.53
HMGCS2P54868 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC24.58■■□□□ 1.53
HMGCS2P54868 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC24.58■■□□□ 1.53
HMGCS2P54868 BET1L-207ENST00000529614 560 ntTSL 5 BASIC24.58■■□□□ 1.53
HMGCS2P54868 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC24.58■■□□□ 1.53
HMGCS2P54868 AL162412.1-201ENST00000567129 965 ntBASIC24.58■■□□□ 1.53
HMGCS2P54868 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
HMGCS2P54868 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
HMGCS2P54868 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
HMGCS2P54868 NFE2L3P1-201ENST00000588207 1959 ntBASIC24.58■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms