Protein–RNA interactions for Protein: P48066

SLC6A11, Sodium- and chloride-dependent GABA transporter 3, humanhuman

Predictions only

Length 632 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A11P48066 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
SLC6A11P48066 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.65■■□□□ 1.06
SLC6A11P48066 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A11P48066 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.65■■□□□ 1.06
SLC6A11P48066 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A11P48066 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A11P48066 AC069152.1-201ENST00000438030 544 ntBASIC21.65■■□□□ 1.06
SLC6A11P48066 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A11P48066 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A11P48066 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.65■■□□□ 1.06
SLC6A11P48066 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A11P48066 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A11P48066 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A11P48066 C9orf163-202ENST00000624034 2573 ntBASIC21.65■■□□□ 1.06
SLC6A11P48066 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SLC6A11P48066 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SLC6A11P48066 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SLC6A11P48066 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.64■■□□□ 1.06
SLC6A11P48066 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SLC6A11P48066 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SLC6A11P48066 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SLC6A11P48066 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.64■■□□□ 1.05
SLC6A11P48066 AC120498.10-201ENST00000621827 505 ntBASIC21.64■■□□□ 1.05
SLC6A11P48066 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SLC6A11P48066 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SLC6A11P48066 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
SLC6A11P48066 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.63■■□□□ 1.05
SLC6A11P48066 AC093787.1-201ENST00000450396 207 ntBASIC21.63■■□□□ 1.05
SLC6A11P48066 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.63■■□□□ 1.05
SLC6A11P48066 AC007322.4-201ENST00000509611 723 ntBASIC21.63■■□□□ 1.05
SLC6A11P48066 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.63■■□□□ 1.05
SLC6A11P48066 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.63■■□□□ 1.05
SLC6A11P48066 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.63■■□□□ 1.05
SLC6A11P48066 TMEM191A-211ENST00000637163 1067 ntBASIC21.63■■□□□ 1.05
SLC6A11P48066 AC133041.1-202ENST00000642053 222 ntBASIC21.63■■□□□ 1.05
SLC6A11P48066 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SLC6A11P48066 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
SLC6A11P48066 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SLC6A11P48066 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.63■■□□□ 1.05
SLC6A11P48066 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SLC6A11P48066 C1orf229-201ENST00000623686 2258 ntBASIC21.63■■□□□ 1.05
SLC6A11P48066 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SLC6A11P48066 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SLC6A11P48066 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.63■■□□□ 1.05
SLC6A11P48066 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
SLC6A11P48066 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SLC6A11P48066 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.62■■□□□ 1.05
SLC6A11P48066 AC061975.6-201ENST00000579045 1553 ntBASIC21.62■■□□□ 1.05
SLC6A11P48066 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SLC6A11P48066 AC003102.1-202ENST00000563394 1796 ntBASIC21.62■■□□□ 1.05
SLC6A11P48066 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.62■■□□□ 1.05
SLC6A11P48066 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.62■■□□□ 1.05
SLC6A11P48066 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SLC6A11P48066 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SLC6A11P48066 POU5F1P4-201ENST00000413175 1085 ntBASIC21.62■■□□□ 1.05
SLC6A11P48066 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.62■■□□□ 1.05
SLC6A11P48066 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SLC6A11P48066 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SLC6A11P48066 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SLC6A11P48066 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SLC6A11P48066 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SLC6A11P48066 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
SLC6A11P48066 AC080038.3-201ENST00000623346 1952 ntBASIC21.61■■□□□ 1.05
SLC6A11P48066 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
SLC6A11P48066 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
SLC6A11P48066 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SLC6A11P48066 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SLC6A11P48066 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.61■■□□□ 1.05
SLC6A11P48066 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SLC6A11P48066 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SLC6A11P48066 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.61■■□□□ 1.05
SLC6A11P48066 MIPEPP3-201ENST00000412105 444 ntBASIC21.61■■□□□ 1.05
SLC6A11P48066 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SLC6A11P48066 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.61■■□□□ 1.05
SLC6A11P48066 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SLC6A11P48066 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SLC6A11P48066 MIR4651-201ENST00000582622 73 ntBASIC21.61■■□□□ 1.05
SLC6A11P48066 AC016405.3-201ENST00000607710 860 ntBASIC21.61■■□□□ 1.05
SLC6A11P48066 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SLC6A11P48066 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SLC6A11P48066 MKRN4P-201ENST00000444706 1521 ntBASIC21.6■■□□□ 1.05
SLC6A11P48066 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
SLC6A11P48066 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SLC6A11P48066 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.6■■□□□ 1.05
SLC6A11P48066 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.6■■□□□ 1.05
SLC6A11P48066 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.6■■□□□ 1.05
SLC6A11P48066 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.6■■□□□ 1.05
SLC6A11P48066 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SLC6A11P48066 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.6■■□□□ 1.05
SLC6A11P48066 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SLC6A11P48066 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SLC6A11P48066 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SLC6A11P48066 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
SLC6A11P48066 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SLC6A11P48066 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SLC6A11P48066 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
SLC6A11P48066 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
SLC6A11P48066 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SLC6A11P48066 AC073210.2-201ENST00000430369 194 ntBASIC21.59■■□□□ 1.05
SLC6A11P48066 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms