Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.3■■□□□ 1
CCNFP41002 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CCNFP41002 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCNFP41002 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.3■■□□□ 1
CCNFP41002 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
CCNFP41002 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCNFP41002 AL157384.1-201ENST00000445995 2473 ntBASIC21.3■■□□□ 1
CCNFP41002 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCNFP41002 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCNFP41002 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
CCNFP41002 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCNFP41002 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.29■■□□□ 1
CCNFP41002 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCNFP41002 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCNFP41002 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.29■■□□□ 1
CCNFP41002 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.29■■□□□ 1
CCNFP41002 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCNFP41002 AP001330.3-201ENST00000520123 633 ntBASIC21.29■■□□□ 1
CCNFP41002 AC008764.7-201ENST00000593779 1081 ntBASIC21.29■■□□□ 1
CCNFP41002 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.29■■□□□ 1
CCNFP41002 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCNFP41002 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.29■■□□□ 1
CCNFP41002 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.29■■□□□ 1
CCNFP41002 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CCNFP41002 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CCNFP41002 LINC01521-201ENST00000504184 1943 ntBASIC21.29■■□□□ 1
CCNFP41002 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CCNFP41002 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
CCNFP41002 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCNFP41002 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CCNFP41002 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CCNFP41002 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCNFP41002 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
CCNFP41002 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.28■■□□□ 1
CCNFP41002 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.28■■□□□ 1
CCNFP41002 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CCNFP41002 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.28■■□□□ 1
CCNFP41002 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.28■■□□□ 1
CCNFP41002 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCNFP41002 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CCNFP41002 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCNFP41002 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
CCNFP41002 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCNFP41002 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCNFP41002 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.27■■□□□ 1
CCNFP41002 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCNFP41002 MIR939-201ENST00000401314 82 ntBASIC21.27■■□□□ 1
CCNFP41002 AC091305.1-201ENST00000479476 895 ntBASIC21.27■■□□□ 1
CCNFP41002 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.27■■□□□ 1
CCNFP41002 AC126544.1-201ENST00000580842 1059 ntBASIC21.27■■□□□ 1
CCNFP41002 AL031432.3-201ENST00000607698 485 ntBASIC21.27■■□□□ 1
CCNFP41002 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCNFP41002 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.27■■□□□ 1
CCNFP41002 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CCNFP41002 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
CCNFP41002 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CCNFP41002 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.27■□□□□ 0.99
CCNFP41002 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
CCNFP41002 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CCNFP41002 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
CCNFP41002 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
CCNFP41002 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCNFP41002 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CCNFP41002 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCNFP41002 RASA4CP-201ENST00000424092 1398 ntBASIC21.26■□□□□ 0.99
CCNFP41002 OXCT2P1-201ENST00000447263 1535 ntBASIC21.26■□□□□ 0.99
CCNFP41002 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.26■□□□□ 0.99
CCNFP41002 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCNFP41002 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCNFP41002 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCNFP41002 AC099791.1-201ENST00000416440 715 ntBASIC21.26■□□□□ 0.99
CCNFP41002 AC010141.3-201ENST00000456659 717 ntBASIC21.26■□□□□ 0.99
CCNFP41002 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCNFP41002 AF213884.3-201ENST00000563833 479 ntBASIC21.26■□□□□ 0.99
CCNFP41002 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCNFP41002 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.26■□□□□ 0.99
CCNFP41002 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCNFP41002 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.26■□□□□ 0.99
CCNFP41002 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCNFP41002 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCNFP41002 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCNFP41002 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.26■□□□□ 0.99
CCNFP41002 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CCNFP41002 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNFP41002 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNFP41002 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CCNFP41002 MIR638-201ENST00000385237 100 ntBASIC21.25■□□□□ 0.99
CCNFP41002 SUDS3P1-201ENST00000505831 966 ntBASIC21.25■□□□□ 0.99
CCNFP41002 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.25■□□□□ 0.99
CCNFP41002 AC005837.3-201ENST00000612163 286 ntBASIC21.25■□□□□ 0.99
CCNFP41002 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNFP41002 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNFP41002 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
CCNFP41002 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNFP41002 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNFP41002 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNFP41002 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNFP41002 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CCNFP41002 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CCNFP41002 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms