Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
COL11A1P12107 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.36■■□□□ 1.49
COL11A1P12107 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
COL11A1P12107 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC24.36■■□□□ 1.49
COL11A1P12107 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
COL11A1P12107 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC24.35■■□□□ 1.49
COL11A1P12107 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL11A1P12107 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL11A1P12107 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
COL11A1P12107 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC24.35■■□□□ 1.49
COL11A1P12107 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
COL11A1P12107 TBCB-214ENST00000629269 413 ntTSL 5 BASIC24.35■■□□□ 1.49
COL11A1P12107 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC24.35■■□□□ 1.49
COL11A1P12107 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC24.35■■□□□ 1.49
COL11A1P12107 AC026471.6-201ENST00000622954 1905 ntBASIC24.34■■□□□ 1.49
COL11A1P12107 AC003102.1-202ENST00000563394 1796 ntBASIC24.34■■□□□ 1.49
COL11A1P12107 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL11A1P12107 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC24.34■■□□□ 1.49
COL11A1P12107 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL11A1P12107 POU5F1P4-201ENST00000413175 1085 ntBASIC24.34■■□□□ 1.49
COL11A1P12107 AC093787.1-201ENST00000450396 207 ntBASIC24.34■■□□□ 1.49
COL11A1P12107 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC24.34■■□□□ 1.49
COL11A1P12107 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC24.34■■□□□ 1.49
COL11A1P12107 OR10C1-204ENST00000622521 1039 ntBASIC24.34■■□□□ 1.49
COL11A1P12107 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL11A1P12107 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL11A1P12107 RNA5SP413-201ENST00000516373 109 ntBASIC24.33■■□□□ 1.49
COL11A1P12107 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL11A1P12107 PFKL-212ENST00000628044 129 ntTSL 3 BASIC24.33■■□□□ 1.49
COL11A1P12107 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL11A1P12107 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.48
COL11A1P12107 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
COL11A1P12107 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
COL11A1P12107 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL11A1P12107 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL11A1P12107 AC080038.3-201ENST00000623346 1952 ntBASIC24.32■■□□□ 1.48
COL11A1P12107 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL11A1P12107 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
COL11A1P12107 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL11A1P12107 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL11A1P12107 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL11A1P12107 PPP1R14BP2-201ENST00000426284 444 ntBASIC24.32■■□□□ 1.48
COL11A1P12107 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC24.32■■□□□ 1.48
COL11A1P12107 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC24.32■■□□□ 1.48
COL11A1P12107 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL11A1P12107 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
COL11A1P12107 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL11A1P12107 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
COL11A1P12107 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC24.31■■□□□ 1.48
COL11A1P12107 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC24.31■■□□□ 1.48
COL11A1P12107 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC24.31■■□□□ 1.48
COL11A1P12107 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC24.31■■□□□ 1.48
COL11A1P12107 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL11A1P12107 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
COL11A1P12107 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC24.31■■□□□ 1.48
COL11A1P12107 BX276092.2-201ENST00000417668 665 ntBASIC24.31■■□□□ 1.48
COL11A1P12107 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
COL11A1P12107 DUSP5P2-201ENST00000426873 1033 ntBASIC24.31■■□□□ 1.48
COL11A1P12107 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC24.31■■□□□ 1.48
COL11A1P12107 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC24.31■■□□□ 1.48
COL11A1P12107 AC120498.10-201ENST00000621827 505 ntBASIC24.31■■□□□ 1.48
COL11A1P12107 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
COL11A1P12107 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL11A1P12107 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
COL11A1P12107 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL11A1P12107 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
COL11A1P12107 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
COL11A1P12107 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC24.3■■□□□ 1.48
COL11A1P12107 AC069236.1-201ENST00000604339 616 ntBASIC24.3■■□□□ 1.48
COL11A1P12107 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL11A1P12107 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC24.3■■□□□ 1.48
COL11A1P12107 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
COL11A1P12107 CD44-222ENST00000526025 1052 ntTSL 2 BASIC24.29■■□□□ 1.48
COL11A1P12107 ISCU-212ENST00000547005 795 ntTSL 3 BASIC24.29■■□□□ 1.48
COL11A1P12107 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL11A1P12107 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC24.29■■□□□ 1.48
COL11A1P12107 AC066615.1-201ENST00000640911 628 ntBASIC24.29■■□□□ 1.48
COL11A1P12107 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL11A1P12107 C9orf163-202ENST00000624034 2573 ntBASIC24.29■■□□□ 1.48
COL11A1P12107 FAM99A-202ENST00000538190 1989 ntBASIC24.29■■□□□ 1.48
COL11A1P12107 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
COL11A1P12107 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
COL11A1P12107 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A1P12107 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A1P12107 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
COL11A1P12107 AC133041.1-202ENST00000642053 222 ntBASIC24.28■■□□□ 1.48
COL11A1P12107 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A1P12107 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
COL11A1P12107 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC24.28■■□□□ 1.48
COL11A1P12107 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A1P12107 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A1P12107 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC24.28■■□□□ 1.48
COL11A1P12107 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A1P12107 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A1P12107 AL162412.1-201ENST00000567129 965 ntBASIC24.28■■□□□ 1.48
COL11A1P12107 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
COL11A1P12107 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
COL11A1P12107 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
COL11A1P12107 AC010980.2-201ENST00000587099 1412 ntBASIC24.27■■□□□ 1.48
COL11A1P12107 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms