Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1BO60663 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.61■□□□□ 0.57
LMX1BO60663 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1BO60663 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1BO60663 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.61■□□□□ 0.57
LMX1BO60663 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.61■□□□□ 0.57
LMX1BO60663 YBX1P1-201ENST00000445822 960 ntBASIC18.61■□□□□ 0.57
LMX1BO60663 OR2I1P-207ENST00000453522 948 ntBASIC18.61■□□□□ 0.57
LMX1BO60663 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.61■□□□□ 0.57
LMX1BO60663 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.61■□□□□ 0.57
LMX1BO60663 IKBKGP1-201ENST00000612193 1073 ntBASIC18.61■□□□□ 0.57
LMX1BO60663 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.61■□□□□ 0.57
LMX1BO60663 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
LMX1BO60663 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
LMX1BO60663 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1BO60663 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LMX1BO60663 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.61■□□□□ 0.57
LMX1BO60663 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
LMX1BO60663 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LMX1BO60663 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.6■□□□□ 0.57
LMX1BO60663 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LMX1BO60663 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.6■□□□□ 0.57
LMX1BO60663 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.6■□□□□ 0.57
LMX1BO60663 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.6■□□□□ 0.57
LMX1BO60663 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LMX1BO60663 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LMX1BO60663 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LMX1BO60663 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LMX1BO60663 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.59■□□□□ 0.57
LMX1BO60663 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.59■□□□□ 0.57
LMX1BO60663 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1BO60663 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1BO60663 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LMX1BO60663 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.59■□□□□ 0.57
LMX1BO60663 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1BO60663 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.59■□□□□ 0.57
LMX1BO60663 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.59■□□□□ 0.57
LMX1BO60663 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1BO60663 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LMX1BO60663 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
LMX1BO60663 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.59■□□□□ 0.57
LMX1BO60663 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
LMX1BO60663 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
LMX1BO60663 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
LMX1BO60663 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LMX1BO60663 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LMX1BO60663 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LMX1BO60663 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
LMX1BO60663 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
LMX1BO60663 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LMX1BO60663 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LMX1BO60663 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LMX1BO60663 TSPY26P-201ENST00000476365 1326 ntBASIC18.58■□□□□ 0.57
LMX1BO60663 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LMX1BO60663 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.58■□□□□ 0.56
LMX1BO60663 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1BO60663 KRT18P5-201ENST00000436075 1291 ntBASIC18.58■□□□□ 0.56
LMX1BO60663 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1BO60663 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.58■□□□□ 0.56
LMX1BO60663 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1BO60663 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1BO60663 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1BO60663 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1BO60663 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LMX1BO60663 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.57■□□□□ 0.56
LMX1BO60663 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.57■□□□□ 0.56
LMX1BO60663 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.57■□□□□ 0.56
LMX1BO60663 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.57■□□□□ 0.56
LMX1BO60663 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.57■□□□□ 0.56
LMX1BO60663 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.57■□□□□ 0.56
LMX1BO60663 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1BO60663 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.57■□□□□ 0.56
LMX1BO60663 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1BO60663 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
LMX1BO60663 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1BO60663 SLC47A1P1-202ENST00000449666 945 ntBASIC18.57■□□□□ 0.56
LMX1BO60663 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.57■□□□□ 0.56
LMX1BO60663 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1BO60663 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
LMX1BO60663 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LMX1BO60663 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.56■□□□□ 0.56
LMX1BO60663 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
LMX1BO60663 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1BO60663 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1BO60663 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
LMX1BO60663 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1BO60663 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.56■□□□□ 0.56
LMX1BO60663 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1BO60663 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LMX1BO60663 AC010141.3-201ENST00000456659 717 ntBASIC18.56■□□□□ 0.56
LMX1BO60663 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.56■□□□□ 0.56
LMX1BO60663 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.56■□□□□ 0.56
LMX1BO60663 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.56■□□□□ 0.56
LMX1BO60663 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.56■□□□□ 0.56
LMX1BO60663 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.56■□□□□ 0.56
LMX1BO60663 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.56■□□□□ 0.56
LMX1BO60663 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.56■□□□□ 0.56
LMX1BO60663 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.56■□□□□ 0.56
LMX1BO60663 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.56■□□□□ 0.56
LMX1BO60663 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms