Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX4O60224 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.1■□□□□ 0.65
SSX4O60224 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX4O60224 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX4O60224 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
SSX4O60224 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX4O60224 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SSX4O60224 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX4O60224 MIR3181-201ENST00000578512 73 ntBASIC19.1■□□□□ 0.65
SSX4O60224 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.1■□□□□ 0.65
SSX4O60224 AC087623.3-201ENST00000607047 1098 ntBASIC19.1■□□□□ 0.65
SSX4O60224 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
SSX4O60224 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SSX4O60224 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
SSX4O60224 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX4O60224 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.1■□□□□ 0.65
SSX4O60224 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX4O60224 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SSX4O60224 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SSX4O60224 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SSX4O60224 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.09■□□□□ 0.65
SSX4O60224 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.09■□□□□ 0.65
SSX4O60224 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX4O60224 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX4O60224 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX4O60224 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.09■□□□□ 0.65
SSX4O60224 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.09■□□□□ 0.65
SSX4O60224 AC233992.3-201ENST00000607491 485 ntBASIC19.09■□□□□ 0.65
SSX4O60224 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.09■□□□□ 0.65
SSX4O60224 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX4O60224 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX4O60224 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.09■□□□□ 0.65
SSX4O60224 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SSX4O60224 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SSX4O60224 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.08■□□□□ 0.65
SSX4O60224 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SSX4O60224 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SSX4O60224 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
SSX4O60224 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SSX4O60224 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SSX4O60224 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SSX4O60224 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.08■□□□□ 0.64
SSX4O60224 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.08■□□□□ 0.64
SSX4O60224 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SSX4O60224 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SSX4O60224 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SSX4O60224 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.08■□□□□ 0.64
SSX4O60224 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
SSX4O60224 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
SSX4O60224 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
SSX4O60224 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.08■□□□□ 0.64
SSX4O60224 LINC01006-201ENST00000333319 2292 ntBASIC19.08■□□□□ 0.64
SSX4O60224 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SSX4O60224 AC087742.1-201ENST00000575880 1738 ntBASIC19.08■□□□□ 0.64
SSX4O60224 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SSX4O60224 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SSX4O60224 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.08■□□□□ 0.64
SSX4O60224 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX4O60224 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
SSX4O60224 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX4O60224 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX4O60224 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.07■□□□□ 0.64
SSX4O60224 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.07■□□□□ 0.64
SSX4O60224 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.07■□□□□ 0.64
SSX4O60224 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SSX4O60224 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX4O60224 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX4O60224 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX4O60224 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX4O60224 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SSX4O60224 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SSX4O60224 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.07■□□□□ 0.64
SSX4O60224 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.07■□□□□ 0.64
SSX4O60224 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SSX4O60224 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SSX4O60224 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SSX4O60224 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.06■□□□□ 0.64
SSX4O60224 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SSX4O60224 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.06■□□□□ 0.64
SSX4O60224 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.06■□□□□ 0.64
SSX4O60224 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SSX4O60224 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SSX4O60224 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.06■□□□□ 0.64
SSX4O60224 BX842568.3-201ENST00000418104 571 ntBASIC19.06■□□□□ 0.64
SSX4O60224 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.06■□□□□ 0.64
SSX4O60224 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.06■□□□□ 0.64
SSX4O60224 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.06■□□□□ 0.64
SSX4O60224 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.06■□□□□ 0.64
SSX4O60224 pRNA.6-201ENST00000610482 90 ntBASIC19.06■□□□□ 0.64
SSX4O60224 pRNA.5-201ENST00000612139 90 ntBASIC19.06■□□□□ 0.64
SSX4O60224 pRNA.11-201ENST00000618423 90 ntBASIC19.06■□□□□ 0.64
SSX4O60224 pRNA.13-201ENST00000619112 90 ntBASIC19.06■□□□□ 0.64
SSX4O60224 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
SSX4O60224 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.06■□□□□ 0.64
SSX4O60224 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.06■□□□□ 0.64
SSX4O60224 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SSX4O60224 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SSX4O60224 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SSX4O60224 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.06■□□□□ 0.64
SSX4O60224 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms