Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC23.92■■□□□ 1.42
MSH4O15457 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSH4O15457 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.91■■□□□ 1.42
MSH4O15457 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH4O15457 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH4O15457 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC23.91■■□□□ 1.42
MSH4O15457 RARG-204ENST00000543726 1779 ntTSL 2 BASIC23.91■■□□□ 1.42
MSH4O15457 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH4O15457 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
MSH4O15457 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC23.91■■□□□ 1.42
MSH4O15457 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC23.91■■□□□ 1.42
MSH4O15457 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC23.91■■□□□ 1.42
MSH4O15457 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23.91■■□□□ 1.42
MSH4O15457 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH4O15457 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSH4O15457 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSH4O15457 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
MSH4O15457 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.9■■□□□ 1.42
MSH4O15457 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSH4O15457 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSH4O15457 AC016769.1-201ENST00000409132 1010 ntBASIC23.9■■□□□ 1.42
MSH4O15457 AC004911.1-201ENST00000416316 871 ntBASIC23.9■■□□□ 1.42
MSH4O15457 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSH4O15457 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC23.9■■□□□ 1.42
MSH4O15457 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC23.9■■□□□ 1.42
MSH4O15457 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC23.9■■□□□ 1.42
MSH4O15457 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSH4O15457 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC23.9■■□□□ 1.42
MSH4O15457 WWOX-218ENST00000627394 894 ntTSL 5 BASIC23.9■■□□□ 1.42
MSH4O15457 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSH4O15457 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSH4O15457 GOLGA2P6-201ENST00000340929 2049 ntBASIC23.89■■□□□ 1.42
MSH4O15457 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC23.89■■□□□ 1.42
MSH4O15457 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
MSH4O15457 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
MSH4O15457 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC23.89■■□□□ 1.42
MSH4O15457 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
MSH4O15457 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC23.89■■□□□ 1.41
MSH4O15457 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
MSH4O15457 NAA20-201ENST00000310450 920 ntTSL 2 BASIC23.89■■□□□ 1.41
MSH4O15457 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
MSH4O15457 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC23.89■■□□□ 1.41
MSH4O15457 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
MSH4O15457 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC23.89■■□□□ 1.41
MSH4O15457 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC23.89■■□□□ 1.41
MSH4O15457 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC23.89■■□□□ 1.41
MSH4O15457 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.89■■□□□ 1.41
MSH4O15457 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
MSH4O15457 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
MSH4O15457 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
MSH4O15457 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH4O15457 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC23.88■■□□□ 1.41
MSH4O15457 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH4O15457 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH4O15457 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC23.88■■□□□ 1.41
MSH4O15457 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH4O15457 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC23.88■■□□□ 1.41
MSH4O15457 UBE2DNL-204ENST00000602536 740 ntBASIC23.88■■□□□ 1.41
MSH4O15457 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH4O15457 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSH4O15457 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
MSH4O15457 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSH4O15457 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH4O15457 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH4O15457 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC23.87■■□□□ 1.41
MSH4O15457 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH4O15457 SPI1-203ENST00000533030 661 ntTSL 2 BASIC23.87■■□□□ 1.41
MSH4O15457 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC23.87■■□□□ 1.41
MSH4O15457 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC23.87■■□□□ 1.41
MSH4O15457 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
MSH4O15457 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH4O15457 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH4O15457 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH4O15457 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH4O15457 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
MSH4O15457 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH4O15457 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSH4O15457 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
MSH4O15457 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
MSH4O15457 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
MSH4O15457 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
MSH4O15457 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.86■■□□□ 1.41
MSH4O15457 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC23.86■■□□□ 1.41
MSH4O15457 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
MSH4O15457 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.86■■□□□ 1.41
MSH4O15457 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC23.86■■□□□ 1.41
MSH4O15457 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC23.85■■□□□ 1.41
MSH4O15457 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms