Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC16.6■□□□□ 0.25
TRAV1-1A0A0B4J248 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC16.6■□□□□ 0.25
TRAV1-1A0A0B4J248 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV1-1A0A0B4J248 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC16.6■□□□□ 0.25
TRAV1-1A0A0B4J248 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TRAV1-1A0A0B4J248 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 USP45-205ENST00000472914 1617 ntTSL 5 BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 AC120024.1-201ENST00000562672 995 ntBASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TRAV1-1A0A0B4J248 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TRAV1-1A0A0B4J248 AC020907.5-201ENST00000624372 1936 ntBASIC16.58■□□□□ 0.25
TRAV1-1A0A0B4J248 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC16.58■□□□□ 0.25
TRAV1-1A0A0B4J248 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.58■□□□□ 0.25
TRAV1-1A0A0B4J248 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TRAV1-1A0A0B4J248 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAV1-1A0A0B4J248 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAV1-1A0A0B4J248 AC079089.2-201ENST00000531211 1277 ntBASIC16.58■□□□□ 0.24
TRAV1-1A0A0B4J248 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV1-1A0A0B4J248 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV1-1A0A0B4J248 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAV1-1A0A0B4J248 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV1-1A0A0B4J248 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
TRAV1-1A0A0B4J248 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV1-1A0A0B4J248 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV1-1A0A0B4J248 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.58■□□□□ 0.24
TRAV1-1A0A0B4J248 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TRAV1-1A0A0B4J248 PCDHAC2-203ENST00000615316 3011 ntBASIC16.58■□□□□ 0.24
TRAV1-1A0A0B4J248 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 AC027702.1-201ENST00000563810 1770 ntBASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 DUX4L9-201ENST00000449051 1259 ntBASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TRAV1-1A0A0B4J248 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 AL162377.1-201ENST00000618844 1793 ntBASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 MIR4281-201ENST00000580852 62 ntBASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 PLK5-205ENST00000642079 1969 ntBASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TRAV1-1A0A0B4J248 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms