Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 AC080038.1-201ENST00000611274 1154 ntBASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
PCDHGA4Q9Y5G9 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDHGA4Q9Y5G9 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 AC127496.7-201ENST00000625110 1798 ntBASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.85■□□□□ 0.93
PCDHGA4Q9Y5G9 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA4Q9Y5G9 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA4Q9Y5G9 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA4Q9Y5G9 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHGA4Q9Y5G9 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
PCDHGA4Q9Y5G9 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.84■□□□□ 0.93
PCDHGA4Q9Y5G9 AC105233.4-201ENST00000642045 216 ntBASIC20.84■□□□□ 0.93
PCDHGA4Q9Y5G9 AC137767.1-201ENST00000602918 1920 ntBASIC20.84■□□□□ 0.93
PCDHGA4Q9Y5G9 AL117328.2-201ENST00000624617 1940 ntBASIC20.84■□□□□ 0.93
PCDHGA4Q9Y5G9 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA4Q9Y5G9 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
PCDHGA4Q9Y5G9 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA4Q9Y5G9 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA4Q9Y5G9 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA4Q9Y5G9 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA4Q9Y5G9 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
PCDHGA4Q9Y5G9 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA4Q9Y5G9 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA4Q9Y5G9 AC006015.1-201ENST00000429970 570 ntBASIC20.83■□□□□ 0.93
PCDHGA4Q9Y5G9 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHGA4Q9Y5G9 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.83■□□□□ 0.93
PCDHGA4Q9Y5G9 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
PCDHGA4Q9Y5G9 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHGA4Q9Y5G9 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHGA4Q9Y5G9 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.83■□□□□ 0.92
PCDHGA4Q9Y5G9 OXCT2P1-201ENST00000447263 1535 ntBASIC20.83■□□□□ 0.92
PCDHGA4Q9Y5G9 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
PCDHGA4Q9Y5G9 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
PCDHGA4Q9Y5G9 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
PCDHGA4Q9Y5G9 AC233723.2-201ENST00000623798 2106 ntBASIC20.83■□□□□ 0.92
PCDHGA4Q9Y5G9 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.83■□□□□ 0.92
PCDHGA4Q9Y5G9 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.83■□□□□ 0.92
PCDHGA4Q9Y5G9 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.83■□□□□ 0.92
PCDHGA4Q9Y5G9 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHGA4Q9Y5G9 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms