Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
CDK11AQ9UQ88 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC33.1■■■□□ 2.89
CDK11AQ9UQ88 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC33.1■■■□□ 2.89
CDK11AQ9UQ88 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
CDK11AQ9UQ88 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC33.1■■■□□ 2.89
CDK11AQ9UQ88 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC33.1■■■□□ 2.89
CDK11AQ9UQ88 BX276092.2-201ENST00000417668 665 ntBASIC33.1■■■□□ 2.89
CDK11AQ9UQ88 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC33.1■■■□□ 2.89
CDK11AQ9UQ88 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC33.1■■■□□ 2.89
CDK11AQ9UQ88 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
CDK11AQ9UQ88 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC33.1■■■□□ 2.89
CDK11AQ9UQ88 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC33.1■■■□□ 2.89
CDK11AQ9UQ88 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC33.1■■■□□ 2.89
CDK11AQ9UQ88 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC33.1■■■□□ 2.89
CDK11AQ9UQ88 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC33.1■■■□□ 2.89
CDK11AQ9UQ88 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
CDK11AQ9UQ88 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
CDK11AQ9UQ88 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC33.09■■■□□ 2.89
CDK11AQ9UQ88 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC33.09■■■□□ 2.89
CDK11AQ9UQ88 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
CDK11AQ9UQ88 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC33.09■■■□□ 2.89
CDK11AQ9UQ88 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC33.09■■■□□ 2.89
CDK11AQ9UQ88 MYC-209ENST00000641252 345 ntBASIC33.09■■■□□ 2.89
CDK11AQ9UQ88 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC33.09■■■□□ 2.89
CDK11AQ9UQ88 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC33.09■■■□□ 2.89
CDK11AQ9UQ88 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
CDK11AQ9UQ88 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC33.08■■■□□ 2.89
CDK11AQ9UQ88 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC33.08■■■□□ 2.89
CDK11AQ9UQ88 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC33.08■■■□□ 2.89
CDK11AQ9UQ88 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC33.08■■■□□ 2.89
CDK11AQ9UQ88 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC33.08■■■□□ 2.89
CDK11AQ9UQ88 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC33.08■■■□□ 2.89
CDK11AQ9UQ88 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC33.08■■■□□ 2.89
CDK11AQ9UQ88 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC33.08■■■□□ 2.89
CDK11AQ9UQ88 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC33.07■■■□□ 2.88
CDK11AQ9UQ88 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC33.07■■■□□ 2.88
CDK11AQ9UQ88 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC33.07■■■□□ 2.88
CDK11AQ9UQ88 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC33.07■■■□□ 2.88
CDK11AQ9UQ88 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC33.07■■■□□ 2.88
CDK11AQ9UQ88 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC33.07■■■□□ 2.88
CDK11AQ9UQ88 RBM17P2-201ENST00000616397 1405 ntBASIC33.07■■■□□ 2.88
CDK11AQ9UQ88 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
CDK11AQ9UQ88 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC33.07■■■□□ 2.88
CDK11AQ9UQ88 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC33.07■■■□□ 2.88
CDK11AQ9UQ88 GCA-201ENST00000233612 1694 ntTSL 2 BASIC33.07■■■□□ 2.88
CDK11AQ9UQ88 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC33.06■■■□□ 2.88
CDK11AQ9UQ88 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC33.06■■■□□ 2.88
CDK11AQ9UQ88 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
CDK11AQ9UQ88 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
CDK11AQ9UQ88 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC33.06■■■□□ 2.88
CDK11AQ9UQ88 AC093827.2-201ENST00000512654 315 ntBASIC33.06■■■□□ 2.88
CDK11AQ9UQ88 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC33.06■■■□□ 2.88
CDK11AQ9UQ88 DET1-205ENST00000558413 583 ntTSL 4 BASIC33.06■■■□□ 2.88
CDK11AQ9UQ88 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC33.06■■■□□ 2.88
CDK11AQ9UQ88 AL591742.1-201ENST00000604433 565 ntBASIC33.06■■■□□ 2.88
CDK11AQ9UQ88 AC083880.1-201ENST00000608266 535 ntBASIC33.06■■■□□ 2.88
CDK11AQ9UQ88 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
CDK11AQ9UQ88 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
CDK11AQ9UQ88 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
CDK11AQ9UQ88 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
CDK11AQ9UQ88 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC33.05■■■□□ 2.88
CDK11AQ9UQ88 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC33.05■■■□□ 2.88
CDK11AQ9UQ88 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC33.05■■■□□ 2.88
CDK11AQ9UQ88 AC243732.1-201ENST00000612648 864 ntBASIC33.05■■■□□ 2.88
CDK11AQ9UQ88 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC33.05■■■□□ 2.88
CDK11AQ9UQ88 AC087742.1-201ENST00000575880 1738 ntBASIC33.05■■■□□ 2.88
CDK11AQ9UQ88 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
CDK11AQ9UQ88 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
CDK11AQ9UQ88 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
CDK11AQ9UQ88 PRORSD1P-201ENST00000295112 541 ntBASIC33.04■■■□□ 2.88
CDK11AQ9UQ88 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
CDK11AQ9UQ88 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC33.04■■■□□ 2.88
CDK11AQ9UQ88 AC097658.1-201ENST00000475555 843 ntBASIC33.04■■■□□ 2.88
CDK11AQ9UQ88 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC33.04■■■□□ 2.88
CDK11AQ9UQ88 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC33.04■■■□□ 2.88
CDK11AQ9UQ88 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC33.04■■■□□ 2.88
CDK11AQ9UQ88 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC33.04■■■□□ 2.88
CDK11AQ9UQ88 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC33.04■■■□□ 2.88
CDK11AQ9UQ88 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
CDK11AQ9UQ88 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC33.04■■■□□ 2.88
CDK11AQ9UQ88 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
CDK11AQ9UQ88 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC33.03■■■□□ 2.88
CDK11AQ9UQ88 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC33.03■■■□□ 2.88
CDK11AQ9UQ88 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC33.03■■■□□ 2.88
CDK11AQ9UQ88 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
CDK11AQ9UQ88 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
CDK11AQ9UQ88 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
CDK11AQ9UQ88 RHEB-204ENST00000472642 900 ntTSL 3 BASIC33.03■■■□□ 2.88
CDK11AQ9UQ88 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
CDK11AQ9UQ88 FGF8-207ENST00000618991 856 ntTSL 3 BASIC33.03■■■□□ 2.88
CDK11AQ9UQ88 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
CDK11AQ9UQ88 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC33.02■■■□□ 2.88
CDK11AQ9UQ88 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
CDK11AQ9UQ88 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
CDK11AQ9UQ88 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC33.02■■■□□ 2.88
CDK11AQ9UQ88 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
CDK11AQ9UQ88 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
CDK11AQ9UQ88 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC33.01■■■□□ 2.87
CDK11AQ9UQ88 RARRES2P4-201ENST00000514074 484 ntBASIC33.01■■■□□ 2.87
CDK11AQ9UQ88 ISCU-212ENST00000547005 795 ntTSL 3 BASIC33.01■■■□□ 2.87
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms