Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC40.66■■■■■ 4.1
SHROOM4Q9ULL8 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC40.65■■■■■ 4.1
SHROOM4Q9ULL8 SERP1-208ENST00000491660 830 ntTSL 2 BASIC40.65■■■■■ 4.1
SHROOM4Q9ULL8 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC40.65■■■■■ 4.1
SHROOM4Q9ULL8 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC40.65■■■■■ 4.1
SHROOM4Q9ULL8 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC40.65■■■■■ 4.1
SHROOM4Q9ULL8 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC40.65■■■■■ 4.1
SHROOM4Q9ULL8 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC40.65■■■■■ 4.1
SHROOM4Q9ULL8 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC40.65■■■■■ 4.1
SHROOM4Q9ULL8 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC40.65■■■■■ 4.1
SHROOM4Q9ULL8 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 AL512625.2-201ENST00000417533 625 ntBASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 UNC93B4-201ENST00000505679 747 ntBASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC40.64■■■■■ 4.1
SHROOM4Q9ULL8 NFE2L3P1-201ENST00000588207 1959 ntBASIC40.63■■■■■ 4.09
SHROOM4Q9ULL8 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC40.63■■■■■ 4.09
SHROOM4Q9ULL8 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC40.63■■■■■ 4.09
SHROOM4Q9ULL8 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC40.63■■■■■ 4.09
SHROOM4Q9ULL8 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC40.62■■■■■ 4.09
SHROOM4Q9ULL8 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC40.62■■■■■ 4.09
SHROOM4Q9ULL8 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC40.62■■■■■ 4.09
SHROOM4Q9ULL8 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC40.62■■■■■ 4.09
SHROOM4Q9ULL8 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC40.62■■■■■ 4.09
SHROOM4Q9ULL8 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC40.61■■■■■ 4.09
SHROOM4Q9ULL8 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC40.61■■■■■ 4.09
SHROOM4Q9ULL8 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC40.61■■■■■ 4.09
SHROOM4Q9ULL8 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC40.61■■■■■ 4.09
SHROOM4Q9ULL8 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC40.61■■■■■ 4.09
SHROOM4Q9ULL8 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC40.61■■■■■ 4.09
SHROOM4Q9ULL8 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC40.61■■■■■ 4.09
SHROOM4Q9ULL8 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC40.61■■■■■ 4.09
SHROOM4Q9ULL8 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC40.61■■■■■ 4.09
SHROOM4Q9ULL8 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC40.61■■■■■ 4.09
SHROOM4Q9ULL8 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC40.61■■■■■ 4.09
SHROOM4Q9ULL8 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC40.6■■■■■ 4.09
SHROOM4Q9ULL8 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC40.6■■■■■ 4.09
SHROOM4Q9ULL8 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC40.6■■■■■ 4.09
SHROOM4Q9ULL8 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC40.6■■■■■ 4.09
SHROOM4Q9ULL8 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC40.6■■■■■ 4.09
SHROOM4Q9ULL8 AC142381.4-202ENST00000563973 229 ntBASIC40.6■■■■■ 4.09
SHROOM4Q9ULL8 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC40.6■■■■■ 4.09
SHROOM4Q9ULL8 AP004607.7-201ENST00000527152 1677 ntBASIC40.6■■■■■ 4.09
SHROOM4Q9ULL8 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC40.6■■■■■ 4.09
SHROOM4Q9ULL8 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC40.6■■■■■ 4.09
SHROOM4Q9ULL8 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC40.6■■■■■ 4.09
SHROOM4Q9ULL8 AC087742.1-201ENST00000575880 1738 ntBASIC40.6■■■■■ 4.09
SHROOM4Q9ULL8 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC40.59■■■■■ 4.09
SHROOM4Q9ULL8 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC40.59■■■■■ 4.09
SHROOM4Q9ULL8 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC40.59■■■■■ 4.09
SHROOM4Q9ULL8 AC006058.3-201ENST00000606217 1069 ntBASIC40.59■■■■■ 4.09
SHROOM4Q9ULL8 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC40.59■■■■■ 4.09
SHROOM4Q9ULL8 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC40.59■■■■■ 4.09
SHROOM4Q9ULL8 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC40.59■■■■■ 4.09
SHROOM4Q9ULL8 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC40.59■■■■■ 4.09
SHROOM4Q9ULL8 AC128676.1-201ENST00000454392 318 ntBASIC40.58■■■■■ 4.09
SHROOM4Q9ULL8 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC40.58■■■■■ 4.09
SHROOM4Q9ULL8 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC40.58■■■■■ 4.09
SHROOM4Q9ULL8 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC40.58■■■■■ 4.09
SHROOM4Q9ULL8 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC40.58■■■■■ 4.09
SHROOM4Q9ULL8 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC40.58■■■■■ 4.09
SHROOM4Q9ULL8 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC40.58■■■■■ 4.09
SHROOM4Q9ULL8 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC40.58■■■■■ 4.09
SHROOM4Q9ULL8 AL158047.1-201ENST00000445918 881 ntBASIC40.58■■■■■ 4.09
SHROOM4Q9ULL8 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC40.57■■■■■ 4.09
SHROOM4Q9ULL8 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC40.57■■■■■ 4.08
SHROOM4Q9ULL8 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC40.57■■■■■ 4.08
SHROOM4Q9ULL8 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC40.57■■■■■ 4.08
SHROOM4Q9ULL8 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC40.57■■■■■ 4.08
SHROOM4Q9ULL8 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC40.57■■■■■ 4.08
SHROOM4Q9ULL8 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC40.56■■■■■ 4.08
SHROOM4Q9ULL8 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC40.56■■■■■ 4.08
SHROOM4Q9ULL8 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC40.55■■■■■ 4.08
SHROOM4Q9ULL8 AC093787.1-201ENST00000450396 207 ntBASIC40.55■■■■■ 4.08
SHROOM4Q9ULL8 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC40.55■■■■■ 4.08
SHROOM4Q9ULL8 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC40.55■■■■■ 4.08
SHROOM4Q9ULL8 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC40.55■■■■■ 4.08
SHROOM4Q9ULL8 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC40.54■■■■■ 4.08
SHROOM4Q9ULL8 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC40.54■■■■■ 4.08
SHROOM4Q9ULL8 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC40.54■■■■■ 4.08
SHROOM4Q9ULL8 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC40.54■■■■■ 4.08
SHROOM4Q9ULL8 AC008550.1-201ENST00000511500 884 ntBASIC40.54■■■■■ 4.08
SHROOM4Q9ULL8 MMAB-206ENST00000540016 945 ntTSL 3 BASIC40.54■■■■■ 4.08
SHROOM4Q9ULL8 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC40.54■■■■■ 4.08
SHROOM4Q9ULL8 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC40.54■■■■■ 4.08
SHROOM4Q9ULL8 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC40.54■■■■■ 4.08
SHROOM4Q9ULL8 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC40.53■■■■■ 4.08
SHROOM4Q9ULL8 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC40.53■■■■■ 4.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms