Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC22.01■■□□□ 1.11
HPS4Q9NQG7 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
HPS4Q9NQG7 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC22.01■■□□□ 1.11
HPS4Q9NQG7 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HPS4Q9NQG7 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HPS4Q9NQG7 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
HPS4Q9NQG7 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
HPS4Q9NQG7 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
HPS4Q9NQG7 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
HPS4Q9NQG7 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC22■■□□□ 1.11
HPS4Q9NQG7 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC22■■□□□ 1.11
HPS4Q9NQG7 UQCRFS1P1-201ENST00000435169 820 ntBASIC22■■□□□ 1.11
HPS4Q9NQG7 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
HPS4Q9NQG7 CD99P1-205ENST00000527459 561 ntBASIC22■■□□□ 1.11
HPS4Q9NQG7 EEF1DP3-203ENST00000566025 782 ntBASIC22■■□□□ 1.11
HPS4Q9NQG7 AL034346.1-201ENST00000568244 1277 ntBASIC22■■□□□ 1.11
HPS4Q9NQG7 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22■■□□□ 1.11
HPS4Q9NQG7 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC22■■□□□ 1.11
HPS4Q9NQG7 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 AP006587.3-201ENST00000525742 1516 ntBASIC21.99■■□□□ 1.11
HPS4Q9NQG7 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
HPS4Q9NQG7 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.98■■□□□ 1.11
HPS4Q9NQG7 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HPS4Q9NQG7 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
HPS4Q9NQG7 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HPS4Q9NQG7 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.98■■□□□ 1.11
HPS4Q9NQG7 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.98■■□□□ 1.11
HPS4Q9NQG7 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.98■■□□□ 1.11
HPS4Q9NQG7 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
HPS4Q9NQG7 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.98■■□□□ 1.11
HPS4Q9NQG7 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.98■■□□□ 1.11
HPS4Q9NQG7 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HPS4Q9NQG7 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.98■■□□□ 1.11
HPS4Q9NQG7 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
HPS4Q9NQG7 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
HPS4Q9NQG7 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HPS4Q9NQG7 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
HPS4Q9NQG7 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.97■■□□□ 1.11
HPS4Q9NQG7 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
HPS4Q9NQG7 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HPS4Q9NQG7 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
HPS4Q9NQG7 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HPS4Q9NQG7 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.97■■□□□ 1.11
HPS4Q9NQG7 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
HPS4Q9NQG7 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
HPS4Q9NQG7 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
HPS4Q9NQG7 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
HPS4Q9NQG7 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HPS4Q9NQG7 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HPS4Q9NQG7 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HPS4Q9NQG7 SLC29A4P1-201ENST00000398760 971 ntBASIC21.96■■□□□ 1.11
HPS4Q9NQG7 AF201337.1-201ENST00000520239 748 ntBASIC21.96■■□□□ 1.11
HPS4Q9NQG7 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.96■■□□□ 1.11
HPS4Q9NQG7 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HPS4Q9NQG7 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HPS4Q9NQG7 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.96■■□□□ 1.11
HPS4Q9NQG7 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.96■■□□□ 1.11
HPS4Q9NQG7 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
HPS4Q9NQG7 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HPS4Q9NQG7 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
HPS4Q9NQG7 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
HPS4Q9NQG7 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HPS4Q9NQG7 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.95■■□□□ 1.1
HPS4Q9NQG7 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
HPS4Q9NQG7 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HPS4Q9NQG7 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.95■■□□□ 1.1
HPS4Q9NQG7 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.95■■□□□ 1.1
HPS4Q9NQG7 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.95■■□□□ 1.1
HPS4Q9NQG7 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.95■■□□□ 1.1
HPS4Q9NQG7 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.95■■□□□ 1.1
HPS4Q9NQG7 KRT18P6-201ENST00000555540 1265 ntBASIC21.95■■□□□ 1.1
HPS4Q9NQG7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.95■■□□□ 1.1
HPS4Q9NQG7 AC133552.2-202ENST00000575694 574 ntBASIC21.95■■□□□ 1.1
HPS4Q9NQG7 AC053503.5-201ENST00000601508 636 ntBASIC21.95■■□□□ 1.1
HPS4Q9NQG7 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.95■■□□□ 1.1
HPS4Q9NQG7 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
HPS4Q9NQG7 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.94■■□□□ 1.1
HPS4Q9NQG7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HPS4Q9NQG7 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.94■■□□□ 1.1
HPS4Q9NQG7 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.94■■□□□ 1.1
HPS4Q9NQG7 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HPS4Q9NQG7 SLC7A5P1-201ENST00000568957 537 ntBASIC21.94■■□□□ 1.1
HPS4Q9NQG7 AC105036.2-201ENST00000569468 176 ntBASIC21.94■■□□□ 1.1
HPS4Q9NQG7 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
HPS4Q9NQG7 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HPS4Q9NQG7 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HPS4Q9NQG7 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms