Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 AC083880.1-201ENST00000608266 535 ntBASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
UPF3AQ9H1J1 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 AC008175.2-201ENST00000612840 297 ntBASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 AC120498.10-201ENST00000621827 505 ntBASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UPF3AQ9H1J1 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.79■■□□□ 1.4
UPF3AQ9H1J1 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
UPF3AQ9H1J1 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC23.79■■□□□ 1.4
UPF3AQ9H1J1 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.79■■□□□ 1.4
UPF3AQ9H1J1 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
UPF3AQ9H1J1 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
UPF3AQ9H1J1 POU5F1P4-201ENST00000413175 1085 ntBASIC23.79■■□□□ 1.4
UPF3AQ9H1J1 BX276092.2-201ENST00000417668 665 ntBASIC23.79■■□□□ 1.4
UPF3AQ9H1J1 AL162412.1-201ENST00000567129 965 ntBASIC23.79■■□□□ 1.4
UPF3AQ9H1J1 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.79■■□□□ 1.4
UPF3AQ9H1J1 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UPF3AQ9H1J1 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
UPF3AQ9H1J1 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
UPF3AQ9H1J1 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC23.77■■□□□ 1.4
UPF3AQ9H1J1 RARRES2P4-201ENST00000514074 484 ntBASIC23.77■■□□□ 1.4
UPF3AQ9H1J1 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC23.77■■□□□ 1.4
UPF3AQ9H1J1 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
UPF3AQ9H1J1 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC23.77■■□□□ 1.4
UPF3AQ9H1J1 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.77■■□□□ 1.4
UPF3AQ9H1J1 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.77■■□□□ 1.4
UPF3AQ9H1J1 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC23.77■■□□□ 1.4
UPF3AQ9H1J1 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3AQ9H1J1 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3AQ9H1J1 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
UPF3AQ9H1J1 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3AQ9H1J1 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.76■■□□□ 1.39
UPF3AQ9H1J1 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
UPF3AQ9H1J1 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.76■■□□□ 1.39
UPF3AQ9H1J1 FGF8-207ENST00000618991 856 ntTSL 3 BASIC23.76■■□□□ 1.39
UPF3AQ9H1J1 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3AQ9H1J1 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UPF3AQ9H1J1 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC23.76■■□□□ 1.39
UPF3AQ9H1J1 RBM17P2-201ENST00000616397 1405 ntBASIC23.76■■□□□ 1.39
UPF3AQ9H1J1 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 KRT16P2-201ENST00000414673 1423 ntBASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
UPF3AQ9H1J1 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
UPF3AQ9H1J1 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
UPF3AQ9H1J1 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.74■■□□□ 1.39
UPF3AQ9H1J1 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC23.74■■□□□ 1.39
UPF3AQ9H1J1 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms