Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.82■□□□□ 0.6
COL12A1Q99715 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
COL12A1Q99715 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL12A1Q99715 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.82■□□□□ 0.6
COL12A1Q99715 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.82■□□□□ 0.6
COL12A1Q99715 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.82■□□□□ 0.6
COL12A1Q99715 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL12A1Q99715 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL12A1Q99715 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL12A1Q99715 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL12A1Q99715 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.82■□□□□ 0.6
COL12A1Q99715 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL12A1Q99715 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL12A1Q99715 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.81■□□□□ 0.6
COL12A1Q99715 AC079630.1-202ENST00000618127 1840 ntBASIC18.81■□□□□ 0.6
COL12A1Q99715 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL12A1Q99715 THRA-202ENST00000394121 2260 ntTSL 2 BASIC18.81■□□□□ 0.6
COL12A1Q99715 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL12A1Q99715 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
COL12A1Q99715 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL12A1Q99715 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.8■□□□□ 0.6
COL12A1Q99715 AC087499.1-201ENST00000418141 1075 ntBASIC18.8■□□□□ 0.6
COL12A1Q99715 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.8■□□□□ 0.6
COL12A1Q99715 KRT18P20-201ENST00000548986 1279 ntBASIC18.8■□□□□ 0.6
COL12A1Q99715 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
COL12A1Q99715 AL049637.2-201ENST00000641778 930 ntBASIC18.8■□□□□ 0.6
COL12A1Q99715 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 KRT17P2-201ENST00000300992 1314 ntBASIC18.8■□□□□ 0.6
COL12A1Q99715 AL355075.4-201ENST00000554988 638 ntBASIC18.8■□□□□ 0.6
COL12A1Q99715 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
COL12A1Q99715 AC069236.1-201ENST00000604339 616 ntBASIC18.8■□□□□ 0.6
COL12A1Q99715 AC068587.7-201ENST00000641602 218 ntBASIC18.8■□□□□ 0.6
COL12A1Q99715 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.8■□□□□ 0.6
COL12A1Q99715 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.8■□□□□ 0.6
COL12A1Q99715 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL12A1Q99715 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL12A1Q99715 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL12A1Q99715 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL12A1Q99715 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL12A1Q99715 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL12A1Q99715 LINC00543-201ENST00000567234 1845 ntBASIC18.79■□□□□ 0.6
COL12A1Q99715 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
COL12A1Q99715 AC233702.5-201ENST00000584107 538 ntBASIC18.79■□□□□ 0.6
COL12A1Q99715 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL12A1Q99715 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL12A1Q99715 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL12A1Q99715 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL12A1Q99715 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.79■□□□□ 0.6
COL12A1Q99715 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.79■□□□□ 0.6
COL12A1Q99715 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL12A1Q99715 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
COL12A1Q99715 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL12A1Q99715 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL12A1Q99715 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL12A1Q99715 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL12A1Q99715 AL162412.1-201ENST00000567129 965 ntBASIC18.78■□□□□ 0.6
COL12A1Q99715 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL12A1Q99715 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL12A1Q99715 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
COL12A1Q99715 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.78■□□□□ 0.6
COL12A1Q99715 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.78■□□□□ 0.6
COL12A1Q99715 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.78■□□□□ 0.6
COL12A1Q99715 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL12A1Q99715 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.78■□□□□ 0.6
COL12A1Q99715 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL12A1Q99715 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL12A1Q99715 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL12A1Q99715 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL12A1Q99715 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL12A1Q99715 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.77■□□□□ 0.6
COL12A1Q99715 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL12A1Q99715 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.77■□□□□ 0.6
COL12A1Q99715 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL12A1Q99715 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL12A1Q99715 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL12A1Q99715 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL12A1Q99715 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL12A1Q99715 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
COL12A1Q99715 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.59
COL12A1Q99715 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL12A1Q99715 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL12A1Q99715 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.77■□□□□ 0.59
COL12A1Q99715 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.77■□□□□ 0.59
COL12A1Q99715 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.77■□□□□ 0.59
COL12A1Q99715 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL12A1Q99715 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.76■□□□□ 0.59
COL12A1Q99715 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms