Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SKA1Q96BD8 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.78■■□□□ 1.08
SKA1Q96BD8 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.78■■□□□ 1.08
SKA1Q96BD8 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
SKA1Q96BD8 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SKA1Q96BD8 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.77■■□□□ 1.08
SKA1Q96BD8 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SKA1Q96BD8 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
SKA1Q96BD8 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.77■■□□□ 1.08
SKA1Q96BD8 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.77■■□□□ 1.08
SKA1Q96BD8 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
SKA1Q96BD8 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SKA1Q96BD8 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.77■■□□□ 1.08
SKA1Q96BD8 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.77■■□□□ 1.08
SKA1Q96BD8 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SKA1Q96BD8 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.77■■□□□ 1.07
SKA1Q96BD8 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
SKA1Q96BD8 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
SKA1Q96BD8 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SKA1Q96BD8 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SKA1Q96BD8 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.76■■□□□ 1.07
SKA1Q96BD8 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SKA1Q96BD8 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.76■■□□□ 1.07
SKA1Q96BD8 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.76■■□□□ 1.07
SKA1Q96BD8 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.76■■□□□ 1.07
SKA1Q96BD8 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SKA1Q96BD8 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
SKA1Q96BD8 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.76■■□□□ 1.07
SKA1Q96BD8 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SKA1Q96BD8 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
SKA1Q96BD8 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.75■■□□□ 1.07
SKA1Q96BD8 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SKA1Q96BD8 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
SKA1Q96BD8 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
SKA1Q96BD8 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SKA1Q96BD8 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SKA1Q96BD8 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
SKA1Q96BD8 AC016769.1-201ENST00000409132 1010 ntBASIC21.75■■□□□ 1.07
SKA1Q96BD8 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
SKA1Q96BD8 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.75■■□□□ 1.07
SKA1Q96BD8 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SKA1Q96BD8 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SKA1Q96BD8 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SKA1Q96BD8 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
SKA1Q96BD8 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SKA1Q96BD8 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.75■■□□□ 1.07
SKA1Q96BD8 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SKA1Q96BD8 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SKA1Q96BD8 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.74■■□□□ 1.07
SKA1Q96BD8 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
SKA1Q96BD8 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
SKA1Q96BD8 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SKA1Q96BD8 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SKA1Q96BD8 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SKA1Q96BD8 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SKA1Q96BD8 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
SKA1Q96BD8 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
SKA1Q96BD8 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
SKA1Q96BD8 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SKA1Q96BD8 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.73■■□□□ 1.07
SKA1Q96BD8 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
SKA1Q96BD8 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SKA1Q96BD8 ID1-201ENST00000376105 1233 ntBASIC21.73■■□□□ 1.07
SKA1Q96BD8 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.73■■□□□ 1.07
SKA1Q96BD8 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SKA1Q96BD8 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.73■■□□□ 1.07
SKA1Q96BD8 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
SKA1Q96BD8 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SKA1Q96BD8 AC087742.1-201ENST00000575880 1738 ntBASIC21.72■■□□□ 1.07
SKA1Q96BD8 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
SKA1Q96BD8 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.72■■□□□ 1.07
SKA1Q96BD8 BX005040.4-201ENST00000637145 1518 ntBASIC21.72■■□□□ 1.07
SKA1Q96BD8 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SKA1Q96BD8 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SKA1Q96BD8 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SKA1Q96BD8 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SKA1Q96BD8 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.72■■□□□ 1.07
SKA1Q96BD8 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SKA1Q96BD8 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.72■■□□□ 1.07
SKA1Q96BD8 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.72■■□□□ 1.07
SKA1Q96BD8 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.72■■□□□ 1.07
SKA1Q96BD8 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SKA1Q96BD8 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SKA1Q96BD8 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SKA1Q96BD8 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
SKA1Q96BD8 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.72■■□□□ 1.07
SKA1Q96BD8 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SKA1Q96BD8 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SKA1Q96BD8 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
SKA1Q96BD8 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.71■■□□□ 1.07
SKA1Q96BD8 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SKA1Q96BD8 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
SKA1Q96BD8 AC004687.1-201ENST00000579003 1625 ntBASIC21.71■■□□□ 1.07
SKA1Q96BD8 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.71■■□□□ 1.07
SKA1Q96BD8 AC010141.3-201ENST00000456659 717 ntBASIC21.71■■□□□ 1.07
SKA1Q96BD8 AC137761.2-201ENST00000561729 223 ntBASIC21.71■■□□□ 1.07
SKA1Q96BD8 AC145350.3-201ENST00000569033 163 ntBASIC21.71■■□□□ 1.07
SKA1Q96BD8 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.71■■□□□ 1.07
SKA1Q96BD8 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
SKA1Q96BD8 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms