Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHROOM3Q8TF72 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
SHROOM3Q8TF72 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHROOM3Q8TF72 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
SHROOM3Q8TF72 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHROOM3Q8TF72 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.77■■□□□ 1.08
SHROOM3Q8TF72 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
SHROOM3Q8TF72 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.77■■□□□ 1.08
SHROOM3Q8TF72 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
SHROOM3Q8TF72 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
SHROOM3Q8TF72 AC055733.4-201ENST00000638462 1354 ntBASIC21.77■■□□□ 1.07
SHROOM3Q8TF72 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
SHROOM3Q8TF72 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
SHROOM3Q8TF72 CLDN5-201ENST00000403084 2357 ntBASIC21.76■■□□□ 1.07
SHROOM3Q8TF72 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SHROOM3Q8TF72 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.76■■□□□ 1.07
SHROOM3Q8TF72 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SHROOM3Q8TF72 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHROOM3Q8TF72 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.76■■□□□ 1.07
SHROOM3Q8TF72 AC026310.3-201ENST00000625186 2373 ntBASIC21.76■■□□□ 1.07
SHROOM3Q8TF72 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
SHROOM3Q8TF72 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.76■■□□□ 1.07
SHROOM3Q8TF72 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.76■■□□□ 1.07
SHROOM3Q8TF72 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
SHROOM3Q8TF72 KRT18P5-201ENST00000436075 1291 ntBASIC21.76■■□□□ 1.07
SHROOM3Q8TF72 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.76■■□□□ 1.07
SHROOM3Q8TF72 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHROOM3Q8TF72 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHROOM3Q8TF72 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
SHROOM3Q8TF72 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHROOM3Q8TF72 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.75■■□□□ 1.07
SHROOM3Q8TF72 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.75■■□□□ 1.07
SHROOM3Q8TF72 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.75■■□□□ 1.07
SHROOM3Q8TF72 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.75■■□□□ 1.07
SHROOM3Q8TF72 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHROOM3Q8TF72 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHROOM3Q8TF72 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.75■■□□□ 1.07
SHROOM3Q8TF72 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHROOM3Q8TF72 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHROOM3Q8TF72 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
SHROOM3Q8TF72 Z98882.1-201ENST00000622160 2253 ntBASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 AC007375.3-201ENST00000600936 2314 ntBASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 AC092437.1-201ENST00000624794 1048 ntBASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHROOM3Q8TF72 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 AC244015.2-201ENST00000616358 1861 ntBASIC21.73■■□□□ 1.07
SHROOM3Q8TF72 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHROOM3Q8TF72 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SHROOM3Q8TF72 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms