Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC004408.2-201ENST00000623613 2777 ntBASIC17.73■□□□□ 0.43
CCDC28AQ8IWP9 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CCDC28AQ8IWP9 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28AQ8IWP9 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CCDC28AQ8IWP9 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC28AQ8IWP9 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28AQ8IWP9 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CCDC28AQ8IWP9 RPS2-202ENST00000526522 924 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC28AQ8IWP9 PCDHAC2-203ENST00000615316 3011 ntBASIC17.72■□□□□ 0.43
CCDC28AQ8IWP9 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28AQ8IWP9 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC28AQ8IWP9 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC28AQ8IWP9 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CCDC28AQ8IWP9 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC28AQ8IWP9 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 TNXA-203ENST00000507684 2038 ntBASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 FZD10-202ENST00000539839 3282 ntBASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CCDC28AQ8IWP9 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC17.71■□□□□ 0.42
CCDC28AQ8IWP9 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC28AQ8IWP9 NEFHP1-201ENST00000412845 2629 ntBASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 NOC2LP1-202ENST00000452600 2235 ntBASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC28AQ8IWP9 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 FEM1AP4-201ENST00000443167 1987 ntBASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC28AQ8IWP9 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms