Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VRK3Q8IV63 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
VRK3Q8IV63 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.86■□□□□ 0.93
VRK3Q8IV63 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.86■□□□□ 0.93
VRK3Q8IV63 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
VRK3Q8IV63 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VRK3Q8IV63 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VRK3Q8IV63 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VRK3Q8IV63 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.85■□□□□ 0.93
VRK3Q8IV63 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VRK3Q8IV63 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.85■□□□□ 0.93
VRK3Q8IV63 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VRK3Q8IV63 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VRK3Q8IV63 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
VRK3Q8IV63 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
VRK3Q8IV63 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.85■□□□□ 0.93
VRK3Q8IV63 TERF1P2-201ENST00000583350 1212 ntBASIC20.85■□□□□ 0.93
VRK3Q8IV63 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.85■□□□□ 0.93
VRK3Q8IV63 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VRK3Q8IV63 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VRK3Q8IV63 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VRK3Q8IV63 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.85■□□□□ 0.93
VRK3Q8IV63 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VRK3Q8IV63 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.85■□□□□ 0.93
VRK3Q8IV63 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.85■□□□□ 0.93
VRK3Q8IV63 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.85■□□□□ 0.93
VRK3Q8IV63 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VRK3Q8IV63 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
VRK3Q8IV63 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VRK3Q8IV63 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.84■□□□□ 0.93
VRK3Q8IV63 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.84■□□□□ 0.93
VRK3Q8IV63 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VRK3Q8IV63 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VRK3Q8IV63 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.84■□□□□ 0.93
VRK3Q8IV63 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VRK3Q8IV63 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VRK3Q8IV63 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.83■□□□□ 0.93
VRK3Q8IV63 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.83■□□□□ 0.93
VRK3Q8IV63 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VRK3Q8IV63 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VRK3Q8IV63 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VRK3Q8IV63 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
VRK3Q8IV63 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VRK3Q8IV63 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
VRK3Q8IV63 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.83■□□□□ 0.93
VRK3Q8IV63 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.83■□□□□ 0.93
VRK3Q8IV63 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VRK3Q8IV63 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VRK3Q8IV63 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
VRK3Q8IV63 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
VRK3Q8IV63 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.83■□□□□ 0.92
VRK3Q8IV63 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
VRK3Q8IV63 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
VRK3Q8IV63 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
VRK3Q8IV63 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VRK3Q8IV63 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VRK3Q8IV63 AC026271.2-201ENST00000428091 497 ntBASIC20.82■□□□□ 0.92
VRK3Q8IV63 AC097381.1-201ENST00000429019 1296 ntBASIC20.82■□□□□ 0.92
VRK3Q8IV63 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VRK3Q8IV63 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.82■□□□□ 0.92
VRK3Q8IV63 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.82■□□□□ 0.92
VRK3Q8IV63 AC087623.3-201ENST00000607047 1098 ntBASIC20.82■□□□□ 0.92
VRK3Q8IV63 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VRK3Q8IV63 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VRK3Q8IV63 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
VRK3Q8IV63 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VRK3Q8IV63 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VRK3Q8IV63 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.81■□□□□ 0.92
VRK3Q8IV63 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.81■□□□□ 0.92
VRK3Q8IV63 KRT18P14-201ENST00000534205 1250 ntBASIC20.81■□□□□ 0.92
VRK3Q8IV63 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.81■□□□□ 0.92
VRK3Q8IV63 MIR6821-201ENST00000617625 74 ntBASIC20.81■□□□□ 0.92
VRK3Q8IV63 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VRK3Q8IV63 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VRK3Q8IV63 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.81■□□□□ 0.92
VRK3Q8IV63 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.81■□□□□ 0.92
VRK3Q8IV63 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VRK3Q8IV63 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VRK3Q8IV63 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VRK3Q8IV63 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VRK3Q8IV63 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
VRK3Q8IV63 AC244015.2-201ENST00000616358 1861 ntBASIC20.8■□□□□ 0.92
VRK3Q8IV63 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
VRK3Q8IV63 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VRK3Q8IV63 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.8■□□□□ 0.92
VRK3Q8IV63 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
VRK3Q8IV63 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VRK3Q8IV63 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VRK3Q8IV63 AC079140.4-201ENST00000507448 529 ntBASIC20.8■□□□□ 0.92
VRK3Q8IV63 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.8■□□□□ 0.92
VRK3Q8IV63 DUX4L2-201ENST00000561772 1275 ntBASIC20.8■□□□□ 0.92
VRK3Q8IV63 RARRES2P6-201ENST00000567333 442 ntBASIC20.8■□□□□ 0.92
VRK3Q8IV63 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.8■□□□□ 0.92
VRK3Q8IV63 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.8■□□□□ 0.92
VRK3Q8IV63 DUX4L6-201ENST00000626483 1275 ntBASIC20.8■□□□□ 0.92
VRK3Q8IV63 DUX4L1-201ENST00000627662 1275 ntBASIC20.8■□□□□ 0.92
VRK3Q8IV63 DUX4L8-201ENST00000629013 1275 ntBASIC20.8■□□□□ 0.92
VRK3Q8IV63 DUX4L3-201ENST00000630187 1275 ntBASIC20.8■□□□□ 0.92
VRK3Q8IV63 DUX4L7-201ENST00000630678 1275 ntBASIC20.8■□□□□ 0.92
VRK3Q8IV63 DUX4L5-201ENST00000630834 1275 ntBASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms