Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC28.7■■■□□ 2.19
USP54Q70EL1 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC28.7■■■□□ 2.19
USP54Q70EL1 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC28.7■■■□□ 2.19
USP54Q70EL1 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
USP54Q70EL1 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
USP54Q70EL1 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
USP54Q70EL1 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC28.7■■■□□ 2.19
USP54Q70EL1 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
USP54Q70EL1 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC28.7■■■□□ 2.18
USP54Q70EL1 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC28.7■■■□□ 2.18
USP54Q70EL1 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC28.7■■■□□ 2.18
USP54Q70EL1 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC28.7■■■□□ 2.18
USP54Q70EL1 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC28.7■■■□□ 2.18
USP54Q70EL1 AC069236.1-201ENST00000604339 616 ntBASIC28.7■■■□□ 2.18
USP54Q70EL1 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC28.7■■■□□ 2.18
USP54Q70EL1 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC28.69■■■□□ 2.18
USP54Q70EL1 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
USP54Q70EL1 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC28.69■■■□□ 2.18
USP54Q70EL1 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC28.69■■■□□ 2.18
USP54Q70EL1 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
USP54Q70EL1 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
USP54Q70EL1 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
USP54Q70EL1 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC28.69■■■□□ 2.18
USP54Q70EL1 AC093323.1-202ENST00000635031 2045 ntBASIC28.69■■■□□ 2.18
USP54Q70EL1 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
USP54Q70EL1 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
USP54Q70EL1 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
USP54Q70EL1 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC28.68■■■□□ 2.18
USP54Q70EL1 AC066615.1-201ENST00000640911 628 ntBASIC28.68■■■□□ 2.18
USP54Q70EL1 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
USP54Q70EL1 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
USP54Q70EL1 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
USP54Q70EL1 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC28.68■■■□□ 2.18
USP54Q70EL1 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
USP54Q70EL1 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
USP54Q70EL1 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC28.67■■■□□ 2.18
USP54Q70EL1 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC28.67■■■□□ 2.18
USP54Q70EL1 MIR4758-201ENST00000577688 71 ntBASIC28.67■■■□□ 2.18
USP54Q70EL1 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
USP54Q70EL1 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC28.67■■■□□ 2.18
USP54Q70EL1 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC28.67■■■□□ 2.18
USP54Q70EL1 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC28.67■■■□□ 2.18
USP54Q70EL1 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
USP54Q70EL1 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
USP54Q70EL1 RARRES2P4-201ENST00000514074 484 ntBASIC28.67■■■□□ 2.18
USP54Q70EL1 ITM2C-210ENST00000620962 501 ntBASIC28.67■■■□□ 2.18
USP54Q70EL1 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC28.67■■■□□ 2.18
USP54Q70EL1 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC28.67■■■□□ 2.18
USP54Q70EL1 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC28.66■■■□□ 2.18
USP54Q70EL1 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC28.66■■■□□ 2.18
USP54Q70EL1 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
USP54Q70EL1 ISCU-212ENST00000547005 795 ntTSL 3 BASIC28.66■■■□□ 2.18
USP54Q70EL1 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC28.66■■■□□ 2.18
USP54Q70EL1 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC28.66■■■□□ 2.18
USP54Q70EL1 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC28.66■■■□□ 2.18
USP54Q70EL1 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
USP54Q70EL1 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
USP54Q70EL1 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
USP54Q70EL1 POU5F1P3-201ENST00000428824 1078 ntBASIC28.65■■■□□ 2.18
USP54Q70EL1 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC28.65■■■□□ 2.18
USP54Q70EL1 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC28.65■■■□□ 2.18
USP54Q70EL1 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC28.65■■■□□ 2.18
USP54Q70EL1 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
USP54Q70EL1 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
USP54Q70EL1 AC098590.1-201ENST00000468126 897 ntBASIC28.64■■■□□ 2.18
USP54Q70EL1 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC28.64■■■□□ 2.18
USP54Q70EL1 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
USP54Q70EL1 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC28.64■■■□□ 2.18
USP54Q70EL1 AC010980.2-201ENST00000587099 1412 ntBASIC28.64■■■□□ 2.18
USP54Q70EL1 RHEB-204ENST00000472642 900 ntTSL 3 BASIC28.64■■■□□ 2.17
USP54Q70EL1 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC28.64■■■□□ 2.17
USP54Q70EL1 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
USP54Q70EL1 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC28.64■■■□□ 2.17
USP54Q70EL1 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC28.63■■■□□ 2.17
USP54Q70EL1 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
USP54Q70EL1 AC061975.6-201ENST00000579045 1553 ntBASIC28.63■■■□□ 2.17
USP54Q70EL1 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
USP54Q70EL1 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC28.63■■■□□ 2.17
USP54Q70EL1 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC28.63■■■□□ 2.17
USP54Q70EL1 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
USP54Q70EL1 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC28.62■■■□□ 2.17
USP54Q70EL1 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
USP54Q70EL1 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
USP54Q70EL1 DUSP5P2-201ENST00000426873 1033 ntBASIC28.62■■■□□ 2.17
USP54Q70EL1 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC28.62■■■□□ 2.17
USP54Q70EL1 RNA5SP413-201ENST00000516373 109 ntBASIC28.62■■■□□ 2.17
USP54Q70EL1 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC28.62■■■□□ 2.17
USP54Q70EL1 AC120498.10-201ENST00000621827 505 ntBASIC28.62■■■□□ 2.17
USP54Q70EL1 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC28.62■■■□□ 2.17
USP54Q70EL1 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC28.62■■■□□ 2.17
USP54Q70EL1 AC127496.7-201ENST00000625110 1798 ntBASIC28.62■■■□□ 2.17
USP54Q70EL1 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
USP54Q70EL1 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
USP54Q70EL1 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
USP54Q70EL1 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC28.61■■■□□ 2.17
USP54Q70EL1 BX276092.2-201ENST00000417668 665 ntBASIC28.61■■■□□ 2.17
USP54Q70EL1 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC28.61■■■□□ 2.17
USP54Q70EL1 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC28.61■■■□□ 2.17
USP54Q70EL1 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
USP54Q70EL1 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms