Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
VPS13CQ709C8 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.89■□□□□ 0.46
VPS13CQ709C8 BX276092.2-201ENST00000417668 665 ntBASIC17.89■□□□□ 0.46
VPS13CQ709C8 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.89■□□□□ 0.46
VPS13CQ709C8 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS13CQ709C8 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.89■□□□□ 0.45
VPS13CQ709C8 C9orf163-202ENST00000624034 2573 ntBASIC17.89■□□□□ 0.45
VPS13CQ709C8 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC17.89■□□□□ 0.45
VPS13CQ709C8 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.89■□□□□ 0.45
VPS13CQ709C8 RPS2P4-201ENST00000476944 856 ntBASIC17.89■□□□□ 0.45
VPS13CQ709C8 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
VPS13CQ709C8 KRT18P20-201ENST00000548986 1279 ntBASIC17.89■□□□□ 0.45
VPS13CQ709C8 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.89■□□□□ 0.45
VPS13CQ709C8 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS13CQ709C8 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC17.89■□□□□ 0.45
VPS13CQ709C8 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC17.89■□□□□ 0.45
VPS13CQ709C8 AP006587.3-201ENST00000525742 1516 ntBASIC17.89■□□□□ 0.45
VPS13CQ709C8 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS13CQ709C8 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS13CQ709C8 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC17.89■□□□□ 0.45
VPS13CQ709C8 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
VPS13CQ709C8 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
VPS13CQ709C8 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC17.88■□□□□ 0.45
VPS13CQ709C8 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.88■□□□□ 0.45
VPS13CQ709C8 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC17.88■□□□□ 0.45
VPS13CQ709C8 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VPS13CQ709C8 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
VPS13CQ709C8 ESRRAP1-201ENST00000400596 1257 ntBASIC17.88■□□□□ 0.45
VPS13CQ709C8 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17.88■□□□□ 0.45
VPS13CQ709C8 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.88■□□□□ 0.45
VPS13CQ709C8 LINC01023-201ENST00000606054 436 ntBASIC17.88■□□□□ 0.45
VPS13CQ709C8 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC17.88■□□□□ 0.45
VPS13CQ709C8 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS13CQ709C8 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
VPS13CQ709C8 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.88■□□□□ 0.45
VPS13CQ709C8 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.88■□□□□ 0.45
VPS13CQ709C8 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.88■□□□□ 0.45
VPS13CQ709C8 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC17.87■□□□□ 0.45
VPS13CQ709C8 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
VPS13CQ709C8 AC142381.4-202ENST00000563973 229 ntBASIC17.87■□□□□ 0.45
VPS13CQ709C8 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13CQ709C8 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13CQ709C8 AC138907.5-202ENST00000569484 235 ntBASIC17.87■□□□□ 0.45
VPS13CQ709C8 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13CQ709C8 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13CQ709C8 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.87■□□□□ 0.45
VPS13CQ709C8 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VPS13CQ709C8 LINC00526-201ENST00000581067 1875 ntBASIC17.87■□□□□ 0.45
VPS13CQ709C8 AP004607.7-201ENST00000527152 1677 ntBASIC17.87■□□□□ 0.45
VPS13CQ709C8 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
VPS13CQ709C8 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13CQ709C8 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13CQ709C8 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.86■□□□□ 0.45
VPS13CQ709C8 AC073912.3-201ENST00000624414 853 ntBASIC17.86■□□□□ 0.45
VPS13CQ709C8 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC17.86■□□□□ 0.45
VPS13CQ709C8 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS13CQ709C8 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13CQ709C8 RCN1P1-201ENST00000400413 996 ntBASIC17.86■□□□□ 0.45
VPS13CQ709C8 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.86■□□□□ 0.45
VPS13CQ709C8 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.86■□□□□ 0.45
VPS13CQ709C8 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13CQ709C8 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
VPS13CQ709C8 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13CQ709C8 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
VPS13CQ709C8 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13CQ709C8 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VPS13CQ709C8 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
VPS13CQ709C8 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
VPS13CQ709C8 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.86■□□□□ 0.45
VPS13CQ709C8 AC008403.3-201ENST00000598924 454 ntBASIC17.86■□□□□ 0.45
VPS13CQ709C8 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13CQ709C8 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
VPS13CQ709C8 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13CQ709C8 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13CQ709C8 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS13CQ709C8 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS13CQ709C8 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13CQ709C8 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13CQ709C8 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.85■□□□□ 0.45
VPS13CQ709C8 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC17.85■□□□□ 0.45
VPS13CQ709C8 AC142381.3-201ENST00000568208 1670 ntBASIC17.85■□□□□ 0.45
VPS13CQ709C8 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.85■□□□□ 0.45
VPS13CQ709C8 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.85■□□□□ 0.45
VPS13CQ709C8 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13CQ709C8 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VPS13CQ709C8 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13CQ709C8 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13CQ709C8 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS13CQ709C8 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.84■□□□□ 0.45
VPS13CQ709C8 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13CQ709C8 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.84■□□□□ 0.45
VPS13CQ709C8 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
VPS13CQ709C8 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
VPS13CQ709C8 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13CQ709C8 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13CQ709C8 MIR1224-201ENST00000408193 85 ntBASIC17.84■□□□□ 0.45
VPS13CQ709C8 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.84■□□□□ 0.45
VPS13CQ709C8 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13CQ709C8 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VPS13CQ709C8 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms