Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM3Q53GG5 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM3Q53GG5 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC17.53■□□□□ 0.4
PDLIM3Q53GG5 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM3Q53GG5 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC17.53■□□□□ 0.4
PDLIM3Q53GG5 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC17.53■□□□□ 0.4
PDLIM3Q53GG5 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM3Q53GG5 AL024507.2-201ENST00000606070 2574 ntBASIC17.53■□□□□ 0.4
PDLIM3Q53GG5 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
PDLIM3Q53GG5 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM3Q53GG5 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PDLIM3Q53GG5 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM3Q53GG5 SYT6-210ENST00000641643 1587 ntBASIC17.52■□□□□ 0.39
PDLIM3Q53GG5 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PDLIM3Q53GG5 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PDLIM3Q53GG5 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC17.52■□□□□ 0.39
PDLIM3Q53GG5 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 CLTA-206ENST00000466396 695 ntTSL 2 BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM3Q53GG5 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 AC026310.3-201ENST00000625186 2373 ntBASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 AC008764.7-201ENST00000593779 1081 ntBASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
PDLIM3Q53GG5 FAM99A-202ENST00000538190 1989 ntBASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM3Q53GG5 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PDLIM3Q53GG5 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms