Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 AC069236.1-201ENST00000604339 616 ntBASIC26.3■■□□□ 1.8
CCDC88AQ3V6T2 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC88AQ3V6T2 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC88AQ3V6T2 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC88AQ3V6T2 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
CCDC88AQ3V6T2 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC88AQ3V6T2 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC88AQ3V6T2 MME-217ENST00000616757 1315 ntTSL 5 BASIC26.29■■□□□ 1.8
CCDC88AQ3V6T2 AC008550.1-201ENST00000511500 884 ntBASIC26.29■■□□□ 1.8
CCDC88AQ3V6T2 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC88AQ3V6T2 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC88AQ3V6T2 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC88AQ3V6T2 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC26.28■■□□□ 1.8
CCDC88AQ3V6T2 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC26.28■■□□□ 1.8
CCDC88AQ3V6T2 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC26.28■■□□□ 1.8
CCDC88AQ3V6T2 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC88AQ3V6T2 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC88AQ3V6T2 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC88AQ3V6T2 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
CCDC88AQ3V6T2 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC26.27■■□□□ 1.8
CCDC88AQ3V6T2 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC88AQ3V6T2 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC88AQ3V6T2 AC128676.1-201ENST00000454392 318 ntBASIC26.27■■□□□ 1.8
CCDC88AQ3V6T2 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC26.27■■□□□ 1.8
CCDC88AQ3V6T2 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC88AQ3V6T2 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC26.27■■□□□ 1.8
CCDC88AQ3V6T2 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.8
CCDC88AQ3V6T2 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC88AQ3V6T2 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC88AQ3V6T2 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
CCDC88AQ3V6T2 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC88AQ3V6T2 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC26.26■■□□□ 1.79
CCDC88AQ3V6T2 EEF1DP3-203ENST00000566025 782 ntBASIC26.26■■□□□ 1.79
CCDC88AQ3V6T2 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
CCDC88AQ3V6T2 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC88AQ3V6T2 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC88AQ3V6T2 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC88AQ3V6T2 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC88AQ3V6T2 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 FXN-202ENST00000396364 980 ntTSL 5 BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 ECEL1P3-201ENST00000427961 737 ntBASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 AC026366.1-201ENST00000488803 879 ntBASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 MAX-217ENST00000557277 728 ntTSL 3 BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC26.25■■□□□ 1.79
CCDC88AQ3V6T2 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC88AQ3V6T2 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC26.24■■□□□ 1.79
CCDC88AQ3V6T2 BAALC-201ENST00000297574 801 ntTSL 3 BASIC26.24■■□□□ 1.79
CCDC88AQ3V6T2 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC26.24■■□□□ 1.79
CCDC88AQ3V6T2 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC88AQ3V6T2 AC008403.3-201ENST00000598924 454 ntBASIC26.24■■□□□ 1.79
CCDC88AQ3V6T2 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC26.24■■□□□ 1.79
CCDC88AQ3V6T2 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC88AQ3V6T2 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC88AQ3V6T2 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC26.23■■□□□ 1.79
CCDC88AQ3V6T2 AL359736.2-201ENST00000621992 437 ntBASIC26.23■■□□□ 1.79
CCDC88AQ3V6T2 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC88AQ3V6T2 AP004607.7-201ENST00000527152 1677 ntBASIC26.23■■□□□ 1.79
CCDC88AQ3V6T2 AC010980.2-201ENST00000587099 1412 ntBASIC26.23■■□□□ 1.79
CCDC88AQ3V6T2 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC88AQ3V6T2 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC88AQ3V6T2 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC26.22■■□□□ 1.79
CCDC88AQ3V6T2 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC88AQ3V6T2 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC88AQ3V6T2 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC88AQ3V6T2 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC88AQ3V6T2 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC88AQ3V6T2 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC88AQ3V6T2 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC88AQ3V6T2 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC88AQ3V6T2 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
CCDC88AQ3V6T2 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC88AQ3V6T2 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC26.21■■□□□ 1.79
CCDC88AQ3V6T2 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC26.21■■□□□ 1.79
CCDC88AQ3V6T2 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CCDC88AQ3V6T2 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CCDC88AQ3V6T2 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CCDC88AQ3V6T2 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
CCDC88AQ3V6T2 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CCDC88AQ3V6T2 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
CCDC88AQ3V6T2 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC26.21■■□□□ 1.79
CCDC88AQ3V6T2 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC26.21■■□□□ 1.79
CCDC88AQ3V6T2 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
CCDC88AQ3V6T2 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
CCDC88AQ3V6T2 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC26.2■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms