Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDH1Q08174 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PCDH1Q08174 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDH1Q08174 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDH1Q08174 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDH1Q08174 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH1Q08174 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH1Q08174 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH1Q08174 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
PCDH1Q08174 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
PCDH1Q08174 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH1Q08174 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
PCDH1Q08174 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH1Q08174 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PCDH1Q08174 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.52■□□□□ 0.88
PCDH1Q08174 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
PCDH1Q08174 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.52■□□□□ 0.88
PCDH1Q08174 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.52■□□□□ 0.88
PCDH1Q08174 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.52■□□□□ 0.88
PCDH1Q08174 Z98882.1-201ENST00000622160 2253 ntBASIC20.52■□□□□ 0.88
PCDH1Q08174 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.87
PCDH1Q08174 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
PCDH1Q08174 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.52■□□□□ 0.87
PCDH1Q08174 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
PCDH1Q08174 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH1Q08174 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH1Q08174 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.51■□□□□ 0.87
PCDH1Q08174 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH1Q08174 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH1Q08174 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.51■□□□□ 0.87
PCDH1Q08174 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.51■□□□□ 0.87
PCDH1Q08174 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.51■□□□□ 0.87
PCDH1Q08174 AC005837.3-201ENST00000612163 286 ntBASIC20.51■□□□□ 0.87
PCDH1Q08174 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH1Q08174 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.51■□□□□ 0.87
PCDH1Q08174 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH1Q08174 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH1Q08174 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH1Q08174 AC005224.4-201ENST00000583262 1652 ntBASIC20.51■□□□□ 0.87
PCDH1Q08174 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCDH1Q08174 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
PCDH1Q08174 AC007375.3-201ENST00000600936 2314 ntBASIC20.5■□□□□ 0.87
PCDH1Q08174 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH1Q08174 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH1Q08174 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH1Q08174 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.5■□□□□ 0.87
PCDH1Q08174 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.5■□□□□ 0.87
PCDH1Q08174 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.5■□□□□ 0.87
PCDH1Q08174 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.5■□□□□ 0.87
PCDH1Q08174 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH1Q08174 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH1Q08174 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.5■□□□□ 0.87
PCDH1Q08174 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
PCDH1Q08174 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.5■□□□□ 0.87
PCDH1Q08174 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.5■□□□□ 0.87
PCDH1Q08174 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH1Q08174 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PCDH1Q08174 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PCDH1Q08174 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDH1Q08174 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDH1Q08174 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDH1Q08174 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
PCDH1Q08174 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDH1Q08174 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDH1Q08174 PKD1P6-201ENST00000343738 4769 ntBASIC20.49■□□□□ 0.87
PCDH1Q08174 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
PCDH1Q08174 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PCDH1Q08174 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
PCDH1Q08174 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
PCDH1Q08174 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDH1Q08174 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCDH1Q08174 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PCDH1Q08174 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.48■□□□□ 0.87
PCDH1Q08174 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.48■□□□□ 0.87
PCDH1Q08174 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PCDH1Q08174 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.48■□□□□ 0.87
PCDH1Q08174 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.48■□□□□ 0.87
PCDH1Q08174 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.48■□□□□ 0.87
PCDH1Q08174 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.48■□□□□ 0.87
PCDH1Q08174 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.48■□□□□ 0.87
PCDH1Q08174 AC142381.2-201ENST00000566120 298 ntBASIC20.48■□□□□ 0.87
PCDH1Q08174 AL354811.1-201ENST00000610286 706 ntBASIC20.48■□□□□ 0.87
PCDH1Q08174 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.48■□□□□ 0.87
PCDH1Q08174 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PCDH1Q08174 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PCDH1Q08174 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.48■□□□□ 0.87
PCDH1Q08174 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PCDH1Q08174 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PCDH1Q08174 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.48■□□□□ 0.87
PCDH1Q08174 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDH1Q08174 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
PCDH1Q08174 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDH1Q08174 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.47■□□□□ 0.87
PCDH1Q08174 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.47■□□□□ 0.87
PCDH1Q08174 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDH1Q08174 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.47■□□□□ 0.87
PCDH1Q08174 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
PCDH1Q08174 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.47■□□□□ 0.87
PCDH1Q08174 AL358852.1-201ENST00000623174 1268 ntBASIC20.47■□□□□ 0.87
PCDH1Q08174 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms