Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PKNOX1P55347 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
PKNOX1P55347 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
PKNOX1P55347 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PKNOX1P55347 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
PKNOX1P55347 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
PKNOX1P55347 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.8■□□□□ 0.92
PKNOX1P55347 AC026471.6-201ENST00000622954 1905 ntBASIC20.8■□□□□ 0.92
PKNOX1P55347 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PKNOX1P55347 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
PKNOX1P55347 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PKNOX1P55347 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.8■□□□□ 0.92
PKNOX1P55347 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PKNOX1P55347 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.8■□□□□ 0.92
PKNOX1P55347 AL034346.1-201ENST00000568244 1277 ntBASIC20.8■□□□□ 0.92
PKNOX1P55347 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.8■□□□□ 0.92
PKNOX1P55347 MIR4466-201ENST00000606121 54 ntBASIC20.8■□□□□ 0.92
PKNOX1P55347 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.8■□□□□ 0.92
PKNOX1P55347 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PKNOX1P55347 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PKNOX1P55347 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PKNOX1P55347 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PKNOX1P55347 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PKNOX1P55347 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PKNOX1P55347 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PKNOX1P55347 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PKNOX1P55347 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PKNOX1P55347 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.79■□□□□ 0.92
PKNOX1P55347 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PKNOX1P55347 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PKNOX1P55347 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PKNOX1P55347 AP005435.1-201ENST00000529293 1178 ntBASIC20.79■□□□□ 0.92
PKNOX1P55347 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.79■□□□□ 0.92
PKNOX1P55347 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PKNOX1P55347 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
PKNOX1P55347 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PKNOX1P55347 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PKNOX1P55347 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PKNOX1P55347 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PKNOX1P55347 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PKNOX1P55347 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.79■□□□□ 0.92
PKNOX1P55347 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.78■□□□□ 0.92
PKNOX1P55347 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.78■□□□□ 0.92
PKNOX1P55347 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.78■□□□□ 0.92
PKNOX1P55347 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
PKNOX1P55347 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.78■□□□□ 0.92
PKNOX1P55347 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.78■□□□□ 0.92
PKNOX1P55347 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.78■□□□□ 0.92
PKNOX1P55347 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.78■□□□□ 0.92
PKNOX1P55347 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
PKNOX1P55347 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
PKNOX1P55347 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PKNOX1P55347 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
PKNOX1P55347 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.77■□□□□ 0.92
PKNOX1P55347 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
PKNOX1P55347 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PKNOX1P55347 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
PKNOX1P55347 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PKNOX1P55347 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
PKNOX1P55347 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PKNOX1P55347 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PKNOX1P55347 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.77■□□□□ 0.92
PKNOX1P55347 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.77■□□□□ 0.92
PKNOX1P55347 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.77■□□□□ 0.92
PKNOX1P55347 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PKNOX1P55347 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PKNOX1P55347 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PKNOX1P55347 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.76■□□□□ 0.91
PKNOX1P55347 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
PKNOX1P55347 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PKNOX1P55347 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.76■□□□□ 0.91
PKNOX1P55347 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PKNOX1P55347 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PKNOX1P55347 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PKNOX1P55347 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PKNOX1P55347 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.76■□□□□ 0.91
PKNOX1P55347 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.76■□□□□ 0.91
PKNOX1P55347 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.76■□□□□ 0.91
PKNOX1P55347 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PKNOX1P55347 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PKNOX1P55347 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PKNOX1P55347 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PKNOX1P55347 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.75■□□□□ 0.91
PKNOX1P55347 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PKNOX1P55347 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PKNOX1P55347 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms