Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX2P48431 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX2P48431 RARRES2P1-201ENST00000474487 481 ntBASIC18.67■□□□□ 0.58
SOX2P48431 MIR6724-1-201ENST00000616420 92 ntBASIC18.67■□□□□ 0.58
SOX2P48431 MIR6724-2-201ENST00000616483 92 ntBASIC18.67■□□□□ 0.58
SOX2P48431 MIR6724-4-201ENST00000617390 92 ntBASIC18.67■□□□□ 0.58
SOX2P48431 MIR6724-3-201ENST00000622482 92 ntBASIC18.67■□□□□ 0.58
SOX2P48431 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.67■□□□□ 0.58
SOX2P48431 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SOX2P48431 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX2P48431 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SOX2P48431 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX2P48431 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX2P48431 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SOX2P48431 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX2P48431 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SOX2P48431 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX2P48431 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.66■□□□□ 0.58
SOX2P48431 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX2P48431 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX2P48431 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX2P48431 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX2P48431 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX2P48431 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX2P48431 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SOX2P48431 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX2P48431 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX2P48431 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX2P48431 AC009299.2-201ENST00000482477 511 ntBASIC18.65■□□□□ 0.58
SOX2P48431 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX2P48431 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
SOX2P48431 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX2P48431 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX2P48431 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX2P48431 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX2P48431 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX2P48431 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX2P48431 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SOX2P48431 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX2P48431 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SOX2P48431 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.64■□□□□ 0.58
SOX2P48431 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
SOX2P48431 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX2P48431 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX2P48431 UNC93B8-201ENST00000511903 705 ntBASIC18.64■□□□□ 0.57
SOX2P48431 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.64■□□□□ 0.57
SOX2P48431 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SOX2P48431 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SOX2P48431 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX2P48431 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX2P48431 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SOX2P48431 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SOX2P48431 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.64■□□□□ 0.57
SOX2P48431 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX2P48431 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX2P48431 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SOX2P48431 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
SOX2P48431 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.64■□□□□ 0.57
SOX2P48431 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SOX2P48431 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX2P48431 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX2P48431 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX2P48431 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SOX2P48431 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SOX2P48431 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC18.63■□□□□ 0.57
SOX2P48431 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SOX2P48431 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SOX2P48431 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX2P48431 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX2P48431 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX2P48431 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX2P48431 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SOX2P48431 AC099791.2-201ENST00000605725 427 ntBASIC18.63■□□□□ 0.57
SOX2P48431 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SOX2P48431 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.63■□□□□ 0.57
SOX2P48431 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.63■□□□□ 0.57
SOX2P48431 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
SOX2P48431 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SOX2P48431 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SOX2P48431 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX2P48431 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SOX2P48431 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SOX2P48431 RBM38-205ENST00000440234 686 ntTSL 2 BASIC18.62■□□□□ 0.57
SOX2P48431 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC18.62■□□□□ 0.57
SOX2P48431 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC18.62■□□□□ 0.57
SOX2P48431 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX2P48431 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX2P48431 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.62■□□□□ 0.57
SOX2P48431 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX2P48431 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SOX2P48431 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SOX2P48431 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX2P48431 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SOX2P48431 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX2P48431 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX2P48431 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX2P48431 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SOX2P48431 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.61■□□□□ 0.57
SOX2P48431 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX2P48431 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms