Protein–RNA interactions for Protein: P48066

SLC6A11, Sodium- and chloride-dependent GABA transporter 3, humanhuman

Predictions only

Length 632 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A11P48066 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
SLC6A11P48066 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SLC6A11P48066 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.72■■□□□ 1.07
SLC6A11P48066 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.72■■□□□ 1.07
SLC6A11P48066 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
SLC6A11P48066 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SLC6A11P48066 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SLC6A11P48066 AC068338.2-201ENST00000563278 1430 ntBASIC21.72■■□□□ 1.07
SLC6A11P48066 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC6A11P48066 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC6A11P48066 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SLC6A11P48066 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SLC6A11P48066 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.71■■□□□ 1.07
SLC6A11P48066 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
SLC6A11P48066 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.71■■□□□ 1.07
SLC6A11P48066 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.71■■□□□ 1.07
SLC6A11P48066 CD99P1-205ENST00000527459 561 ntBASIC21.71■■□□□ 1.07
SLC6A11P48066 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.71■■□□□ 1.07
SLC6A11P48066 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.71■■□□□ 1.07
SLC6A11P48066 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.71■■□□□ 1.07
SLC6A11P48066 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SLC6A11P48066 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
SLC6A11P48066 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SLC6A11P48066 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.7■■□□□ 1.06
SLC6A11P48066 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SLC6A11P48066 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
SLC6A11P48066 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.7■■□□□ 1.06
SLC6A11P48066 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SLC6A11P48066 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SLC6A11P48066 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.7■■□□□ 1.06
SLC6A11P48066 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
SLC6A11P48066 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
SLC6A11P48066 AC013268.1-206ENST00000638368 961 ntBASIC21.7■■□□□ 1.06
SLC6A11P48066 AC112229.1-201ENST00000639295 961 ntBASIC21.7■■□□□ 1.06
SLC6A11P48066 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SLC6A11P48066 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.7■■□□□ 1.06
SLC6A11P48066 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SLC6A11P48066 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.69■■□□□ 1.06
SLC6A11P48066 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A11P48066 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A11P48066 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A11P48066 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A11P48066 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A11P48066 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A11P48066 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A11P48066 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.69■■□□□ 1.06
SLC6A11P48066 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.69■■□□□ 1.06
SLC6A11P48066 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.69■■□□□ 1.06
SLC6A11P48066 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.69■■□□□ 1.06
SLC6A11P48066 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A11P48066 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A11P48066 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A11P48066 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A11P48066 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SLC6A11P48066 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
SLC6A11P48066 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
SLC6A11P48066 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SLC6A11P48066 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SLC6A11P48066 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.68■■□□□ 1.06
SLC6A11P48066 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.68■■□□□ 1.06
SLC6A11P48066 KRT18P6-201ENST00000555540 1265 ntBASIC21.68■■□□□ 1.06
SLC6A11P48066 AC098934.4-201ENST00000564127 592 ntBASIC21.68■■□□□ 1.06
SLC6A11P48066 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.68■■□□□ 1.06
SLC6A11P48066 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SLC6A11P48066 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.68■■□□□ 1.06
SLC6A11P48066 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SLC6A11P48066 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SLC6A11P48066 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
SLC6A11P48066 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A11P48066 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A11P48066 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A11P48066 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.67■■□□□ 1.06
SLC6A11P48066 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.67■■□□□ 1.06
SLC6A11P48066 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A11P48066 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.67■■□□□ 1.06
SLC6A11P48066 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.67■■□□□ 1.06
SLC6A11P48066 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A11P48066 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
SLC6A11P48066 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.67■■□□□ 1.06
SLC6A11P48066 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.67■■□□□ 1.06
SLC6A11P48066 AC008175.2-201ENST00000612840 297 ntBASIC21.67■■□□□ 1.06
SLC6A11P48066 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.67■■□□□ 1.06
SLC6A11P48066 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A11P48066 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.67■■□□□ 1.06
SLC6A11P48066 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A11P48066 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SLC6A11P48066 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SLC6A11P48066 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SLC6A11P48066 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SLC6A11P48066 CYP2T1P-201ENST00000432607 1285 ntBASIC21.66■■□□□ 1.06
SLC6A11P48066 TSPY20P-201ENST00000450910 630 ntBASIC21.66■■□□□ 1.06
SLC6A11P48066 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SLC6A11P48066 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.66■■□□□ 1.06
SLC6A11P48066 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.66■■□□□ 1.06
SLC6A11P48066 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.66■■□□□ 1.06
SLC6A11P48066 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SLC6A11P48066 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SLC6A11P48066 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.66■■□□□ 1.06
SLC6A11P48066 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SLC6A11P48066 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms