Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PTPN9P43378 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PTPN9P43378 LINC02228-203ENST00000641970 1355 ntBASIC22.17■■□□□ 1.14
PTPN9P43378 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PTPN9P43378 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC22.17■■□□□ 1.14
PTPN9P43378 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC22.17■■□□□ 1.14
PTPN9P43378 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
PTPN9P43378 YBX1P1-201ENST00000445822 960 ntBASIC22.17■■□□□ 1.14
PTPN9P43378 LGR4-203ENST00000480977 492 ntTSL 2 BASIC22.17■■□□□ 1.14
PTPN9P43378 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PTPN9P43378 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC22.17■■□□□ 1.14
PTPN9P43378 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC22.17■■□□□ 1.14
PTPN9P43378 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC22.17■■□□□ 1.14
PTPN9P43378 SP2-202ENST00000613139 908 ntTSL 5 BASIC22.17■■□□□ 1.14
PTPN9P43378 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC22.17■■□□□ 1.14
PTPN9P43378 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PTPN9P43378 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PTPN9P43378 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC22.17■■□□□ 1.14
PTPN9P43378 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PTPN9P43378 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PTPN9P43378 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PTPN9P43378 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC22.16■■□□□ 1.14
PTPN9P43378 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PTPN9P43378 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
PTPN9P43378 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PTPN9P43378 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PTPN9P43378 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PTPN9P43378 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PTPN9P43378 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PTPN9P43378 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PTPN9P43378 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PTPN9P43378 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
PTPN9P43378 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC22.15■■□□□ 1.14
PTPN9P43378 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.15■■□□□ 1.14
PTPN9P43378 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTPN9P43378 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC22.15■■□□□ 1.14
PTPN9P43378 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PTPN9P43378 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
PTPN9P43378 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC22.15■■□□□ 1.14
PTPN9P43378 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PTPN9P43378 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC22.15■■□□□ 1.14
PTPN9P43378 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PTPN9P43378 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.14
PTPN9P43378 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.14
PTPN9P43378 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
PTPN9P43378 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC22.14■■□□□ 1.14
PTPN9P43378 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
PTPN9P43378 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTPN9P43378 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC22.14■■□□□ 1.13
PTPN9P43378 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC22.14■■□□□ 1.13
PTPN9P43378 MFF-207ENST00000409565 1548 ntTSL 2 BASIC22.14■■□□□ 1.13
PTPN9P43378 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTPN9P43378 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTPN9P43378 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
PTPN9P43378 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTPN9P43378 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC22.14■■□□□ 1.13
PTPN9P43378 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
PTPN9P43378 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTPN9P43378 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTPN9P43378 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC22.13■■□□□ 1.13
PTPN9P43378 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PTPN9P43378 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTPN9P43378 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC22.13■■□□□ 1.13
PTPN9P43378 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC22.13■■□□□ 1.13
PTPN9P43378 TERF1P2-201ENST00000583350 1212 ntBASIC22.13■■□□□ 1.13
PTPN9P43378 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC22.13■■□□□ 1.13
PTPN9P43378 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PTPN9P43378 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC22.13■■□□□ 1.13
PTPN9P43378 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTPN9P43378 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC22.13■■□□□ 1.13
PTPN9P43378 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTPN9P43378 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC22.13■■□□□ 1.13
PTPN9P43378 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTPN9P43378 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PTPN9P43378 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PTPN9P43378 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC22.13■■□□□ 1.13
PTPN9P43378 Z98882.1-201ENST00000622160 2253 ntBASIC22.12■■□□□ 1.13
PTPN9P43378 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PTPN9P43378 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC22.12■■□□□ 1.13
PTPN9P43378 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTPN9P43378 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC22.12■■□□□ 1.13
PTPN9P43378 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC22.12■■□□□ 1.13
PTPN9P43378 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC22.12■■□□□ 1.13
PTPN9P43378 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTPN9P43378 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC22.12■■□□□ 1.13
PTPN9P43378 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC22.12■■□□□ 1.13
PTPN9P43378 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTPN9P43378 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PTPN9P43378 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
PTPN9P43378 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC22.12■■□□□ 1.13
PTPN9P43378 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTPN9P43378 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTPN9P43378 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
PTPN9P43378 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTPN9P43378 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTPN9P43378 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTPN9P43378 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTPN9P43378 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTPN9P43378 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PTPN9P43378 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms