Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MSX1P28360 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSX1P28360 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
MSX1P28360 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
MSX1P28360 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MSX1P28360 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
MSX1P28360 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.47■□□□□ 0.71
MSX1P28360 AC055733.4-201ENST00000638462 1354 ntBASIC19.47■□□□□ 0.71
MSX1P28360 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX1P28360 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.47■□□□□ 0.71
MSX1P28360 FAM99A-202ENST00000538190 1989 ntBASIC19.47■□□□□ 0.71
MSX1P28360 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.47■□□□□ 0.71
MSX1P28360 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX1P28360 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX1P28360 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX1P28360 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MSX1P28360 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.47■□□□□ 0.71
MSX1P28360 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MSX1P28360 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MSX1P28360 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX1P28360 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSX1P28360 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSX1P28360 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.46■□□□□ 0.71
MSX1P28360 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.46■□□□□ 0.71
MSX1P28360 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.46■□□□□ 0.71
MSX1P28360 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MSX1P28360 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MSX1P28360 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.46■□□□□ 0.71
MSX1P28360 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.46■□□□□ 0.71
MSX1P28360 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSX1P28360 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.46■□□□□ 0.71
MSX1P28360 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.46■□□□□ 0.71
MSX1P28360 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSX1P28360 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
MSX1P28360 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.46■□□□□ 0.71
MSX1P28360 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSX1P28360 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSX1P28360 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.45■□□□□ 0.7
MSX1P28360 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.45■□□□□ 0.7
MSX1P28360 AC079834.2-201ENST00000609776 1949 ntBASIC19.45■□□□□ 0.7
MSX1P28360 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
MSX1P28360 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.45■□□□□ 0.7
MSX1P28360 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
MSX1P28360 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSX1P28360 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
MSX1P28360 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
MSX1P28360 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSX1P28360 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.45■□□□□ 0.7
MSX1P28360 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.45■□□□□ 0.7
MSX1P28360 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
MSX1P28360 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.45■□□□□ 0.7
MSX1P28360 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSX1P28360 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSX1P28360 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
MSX1P28360 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSX1P28360 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSX1P28360 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MSX1P28360 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
MSX1P28360 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MSX1P28360 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MSX1P28360 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSX1P28360 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
MSX1P28360 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
MSX1P28360 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.44■□□□□ 0.7
MSX1P28360 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.44■□□□□ 0.7
MSX1P28360 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.44■□□□□ 0.7
MSX1P28360 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.44■□□□□ 0.7
MSX1P28360 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.44■□□□□ 0.7
MSX1P28360 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.44■□□□□ 0.7
MSX1P28360 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MSX1P28360 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSX1P28360 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MSX1P28360 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSX1P28360 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSX1P28360 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX1P28360 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX1P28360 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX1P28360 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.43■□□□□ 0.7
MSX1P28360 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
MSX1P28360 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX1P28360 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.43■□□□□ 0.7
MSX1P28360 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MSX1P28360 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
MSX1P28360 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.43■□□□□ 0.7
MSX1P28360 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.43■□□□□ 0.7
MSX1P28360 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
MSX1P28360 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX1P28360 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MSX1P28360 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.43■□□□□ 0.7
MSX1P28360 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MSX1P28360 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.43■□□□□ 0.7
MSX1P28360 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX1P28360 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSX1P28360 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.42■□□□□ 0.7
MSX1P28360 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.42■□□□□ 0.7
MSX1P28360 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
MSX1P28360 EP400NL-214ENST00000641289 2402 ntBASIC19.42■□□□□ 0.7
MSX1P28360 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSX1P28360 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.42■□□□□ 0.7
MSX1P28360 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms