Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 AC009237.3-201ENST00000393279 1427 ntBASIC20.75■□□□□ 0.91
CDH3P22223 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
CDH3P22223 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CDH3P22223 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDH3P22223 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CDH3P22223 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDH3P22223 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CDH3P22223 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CDH3P22223 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDH3P22223 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CDH3P22223 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDH3P22223 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.74■□□□□ 0.91
CDH3P22223 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDH3P22223 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.74■□□□□ 0.91
CDH3P22223 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CDH3P22223 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDH3P22223 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CDH3P22223 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.73■□□□□ 0.91
CDH3P22223 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH3P22223 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH3P22223 LINC00526-201ENST00000581067 1875 ntBASIC20.73■□□□□ 0.91
CDH3P22223 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.73■□□□□ 0.91
CDH3P22223 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH3P22223 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CDH3P22223 AC127496.7-201ENST00000625110 1798 ntBASIC20.73■□□□□ 0.91
CDH3P22223 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CDH3P22223 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CDH3P22223 AC022517.1-201ENST00000592429 346 ntBASIC20.73■□□□□ 0.91
CDH3P22223 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CDH3P22223 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CDH3P22223 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.73■□□□□ 0.91
CDH3P22223 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH3P22223 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH3P22223 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH3P22223 AP004607.7-201ENST00000527152 1677 ntBASIC20.73■□□□□ 0.91
CDH3P22223 AC005224.4-201ENST00000583262 1652 ntBASIC20.73■□□□□ 0.91
CDH3P22223 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.73■□□□□ 0.91
CDH3P22223 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDH3P22223 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CDH3P22223 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CDH3P22223 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CDH3P22223 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CDH3P22223 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.72■□□□□ 0.91
CDH3P22223 AC079140.4-201ENST00000507448 529 ntBASIC20.72■□□□□ 0.91
CDH3P22223 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.72■□□□□ 0.91
CDH3P22223 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.72■□□□□ 0.91
CDH3P22223 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CDH3P22223 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CDH3P22223 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CDH3P22223 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.72■□□□□ 0.91
CDH3P22223 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDH3P22223 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDH3P22223 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDH3P22223 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDH3P22223 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDH3P22223 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDH3P22223 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.71■□□□□ 0.91
CDH3P22223 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDH3P22223 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDH3P22223 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.71■□□□□ 0.91
CDH3P22223 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.71■□□□□ 0.91
CDH3P22223 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
CDH3P22223 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CDH3P22223 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.71■□□□□ 0.91
CDH3P22223 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH3P22223 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.7■□□□□ 0.9
CDH3P22223 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH3P22223 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH3P22223 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CDH3P22223 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.7■□□□□ 0.9
CDH3P22223 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.7■□□□□ 0.9
CDH3P22223 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.7■□□□□ 0.9
CDH3P22223 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.7■□□□□ 0.9
CDH3P22223 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.7■□□□□ 0.9
CDH3P22223 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.7■□□□□ 0.9
CDH3P22223 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH3P22223 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH3P22223 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH3P22223 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.7■□□□□ 0.9
CDH3P22223 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH3P22223 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.7■□□□□ 0.9
CDH3P22223 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CDH3P22223 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH3P22223 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.69■□□□□ 0.9
CDH3P22223 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH3P22223 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CDH3P22223 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
CDH3P22223 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.69■□□□□ 0.9
CDH3P22223 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.69■□□□□ 0.9
CDH3P22223 AL034346.1-201ENST00000568244 1277 ntBASIC20.69■□□□□ 0.9
CDH3P22223 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CDH3P22223 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.69■□□□□ 0.9
CDH3P22223 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CDH3P22223 AL137060.1-201ENST00000618151 2648 ntBASIC20.69■□□□□ 0.9
CDH3P22223 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.69■□□□□ 0.9
CDH3P22223 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.68■□□□□ 0.9
CDH3P22223 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDH3P22223 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.68■□□□□ 0.9
CDH3P22223 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDH3P22223 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms