Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSH3P20585 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH3P20585 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
MSH3P20585 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
MSH3P20585 MIR935-201ENST00000401179 91 ntBASIC21.16■□□□□ 0.98
MSH3P20585 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.16■□□□□ 0.98
MSH3P20585 AC097381.1-201ENST00000429019 1296 ntBASIC21.16■□□□□ 0.98
MSH3P20585 RARRES2P6-201ENST00000567333 442 ntBASIC21.16■□□□□ 0.98
MSH3P20585 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH3P20585 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH3P20585 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.16■□□□□ 0.98
MSH3P20585 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.16■□□□□ 0.98
MSH3P20585 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.16■□□□□ 0.98
MSH3P20585 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.16■□□□□ 0.98
MSH3P20585 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.15■□□□□ 0.98
MSH3P20585 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH3P20585 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSH3P20585 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
MSH3P20585 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.15■□□□□ 0.98
MSH3P20585 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
MSH3P20585 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
MSH3P20585 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MSH3P20585 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
MSH3P20585 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
MSH3P20585 MIR6821-201ENST00000617625 74 ntBASIC21.15■□□□□ 0.98
MSH3P20585 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.15■□□□□ 0.98
MSH3P20585 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH3P20585 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH3P20585 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.15■□□□□ 0.98
MSH3P20585 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH3P20585 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH3P20585 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
MSH3P20585 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.98
MSH3P20585 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
MSH3P20585 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
MSH3P20585 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.14■□□□□ 0.98
MSH3P20585 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
MSH3P20585 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.14■□□□□ 0.97
MSH3P20585 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
MSH3P20585 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH3P20585 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
MSH3P20585 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
MSH3P20585 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
MSH3P20585 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.14■□□□□ 0.97
MSH3P20585 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH3P20585 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
MSH3P20585 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MSH3P20585 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.14■□□□□ 0.97
MSH3P20585 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
MSH3P20585 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
MSH3P20585 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH3P20585 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH3P20585 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
MSH3P20585 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
MSH3P20585 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MSH3P20585 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MSH3P20585 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH3P20585 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MSH3P20585 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MSH3P20585 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.13■□□□□ 0.97
MSH3P20585 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH3P20585 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.13■□□□□ 0.97
MSH3P20585 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.13■□□□□ 0.97
MSH3P20585 CCDC92B-201ENST00000575506 885 ntBASIC21.13■□□□□ 0.97
MSH3P20585 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MSH3P20585 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH3P20585 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH3P20585 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH3P20585 AC055733.4-201ENST00000638462 1354 ntBASIC21.12■□□□□ 0.97
MSH3P20585 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH3P20585 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.12■□□□□ 0.97
MSH3P20585 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH3P20585 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.12■□□□□ 0.97
MSH3P20585 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.12■□□□□ 0.97
MSH3P20585 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.12■□□□□ 0.97
MSH3P20585 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.12■□□□□ 0.97
MSH3P20585 TERF1P2-201ENST00000583350 1212 ntBASIC21.12■□□□□ 0.97
MSH3P20585 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH3P20585 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH3P20585 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH3P20585 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH3P20585 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH3P20585 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
MSH3P20585 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH3P20585 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
MSH3P20585 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.11■□□□□ 0.97
MSH3P20585 AC026271.2-201ENST00000428091 497 ntBASIC21.11■□□□□ 0.97
MSH3P20585 KRT18P14-201ENST00000534205 1250 ntBASIC21.11■□□□□ 0.97
MSH3P20585 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.11■□□□□ 0.97
MSH3P20585 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
MSH3P20585 AC087623.3-201ENST00000607047 1098 ntBASIC21.11■□□□□ 0.97
MSH3P20585 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.11■□□□□ 0.97
MSH3P20585 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.11■□□□□ 0.97
MSH3P20585 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.11■□□□□ 0.97
MSH3P20585 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH3P20585 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.11■□□□□ 0.97
MSH3P20585 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
MSH3P20585 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH3P20585 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
MSH3P20585 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms