Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
HMGN4O00479 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGN4O00479 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HMGN4O00479 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.8■□□□□ 0.76
HMGN4O00479 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.8■□□□□ 0.76
HMGN4O00479 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.8■□□□□ 0.76
HMGN4O00479 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
HMGN4O00479 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.8■□□□□ 0.76
HMGN4O00479 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HMGN4O00479 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGN4O00479 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.8■□□□□ 0.76
HMGN4O00479 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
HMGN4O00479 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGN4O00479 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGN4O00479 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HMGN4O00479 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGN4O00479 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HMGN4O00479 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.79■□□□□ 0.76
HMGN4O00479 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.79■□□□□ 0.76
HMGN4O00479 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.79■□□□□ 0.76
HMGN4O00479 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HMGN4O00479 AC099791.1-201ENST00000416440 715 ntBASIC19.79■□□□□ 0.76
HMGN4O00479 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.79■□□□□ 0.76
HMGN4O00479 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HMGN4O00479 PBX2P1-201ENST00000493219 1291 ntBASIC19.79■□□□□ 0.76
HMGN4O00479 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.79■□□□□ 0.76
HMGN4O00479 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.79■□□□□ 0.76
HMGN4O00479 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.79■□□□□ 0.76
HMGN4O00479 AC106739.1-201ENST00000617035 715 ntBASIC19.79■□□□□ 0.76
HMGN4O00479 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
HMGN4O00479 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.78■□□□□ 0.76
HMGN4O00479 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGN4O00479 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.78■□□□□ 0.76
HMGN4O00479 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.78■□□□□ 0.76
HMGN4O00479 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HMGN4O00479 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.78■□□□□ 0.76
HMGN4O00479 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGN4O00479 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.78■□□□□ 0.76
HMGN4O00479 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGN4O00479 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HMGN4O00479 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.78■□□□□ 0.76
HMGN4O00479 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.78■□□□□ 0.76
HMGN4O00479 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.78■□□□□ 0.76
HMGN4O00479 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.78■□□□□ 0.76
HMGN4O00479 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.78■□□□□ 0.76
HMGN4O00479 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGN4O00479 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HMGN4O00479 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
HMGN4O00479 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.78■□□□□ 0.76
HMGN4O00479 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.78■□□□□ 0.76
HMGN4O00479 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
HMGN4O00479 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
HMGN4O00479 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
HMGN4O00479 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGN4O00479 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
HMGN4O00479 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HMGN4O00479 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGN4O00479 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
HMGN4O00479 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGN4O00479 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGN4O00479 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGN4O00479 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
HMGN4O00479 AC027682.1-201ENST00000562846 899 ntBASIC19.77■□□□□ 0.76
HMGN4O00479 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.77■□□□□ 0.76
HMGN4O00479 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.77■□□□□ 0.76
HMGN4O00479 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HMGN4O00479 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HMGN4O00479 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.77■□□□□ 0.76
HMGN4O00479 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
HMGN4O00479 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.77■□□□□ 0.76
HMGN4O00479 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.77■□□□□ 0.76
HMGN4O00479 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
HMGN4O00479 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
HMGN4O00479 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.75
HMGN4O00479 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGN4O00479 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
HMGN4O00479 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGN4O00479 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGN4O00479 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
HMGN4O00479 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGN4O00479 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HMGN4O00479 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.76■□□□□ 0.75
HMGN4O00479 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.76■□□□□ 0.75
HMGN4O00479 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGN4O00479 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.76■□□□□ 0.75
HMGN4O00479 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGN4O00479 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGN4O00479 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
HMGN4O00479 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGN4O00479 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
HMGN4O00479 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.75■□□□□ 0.75
HMGN4O00479 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGN4O00479 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGN4O00479 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGN4O00479 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGN4O00479 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGN4O00479 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGN4O00479 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGN4O00479 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.75■□□□□ 0.75
HMGN4O00479 AP001330.3-201ENST00000520123 633 ntBASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms