Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 LINC02228-203ENST00000641970 1355 ntBASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 AC087239.1-201ENST00000622671 572 ntBASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.85■□□□□ 0.93
PCDHB3Q9Y5E6 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 CCDC92B-201ENST00000575506 885 ntBASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDHB3Q9Y5E6 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.83■□□□□ 0.93
PCDHB3Q9Y5E6 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.83■□□□□ 0.93
PCDHB3Q9Y5E6 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHB3Q9Y5E6 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDHB3Q9Y5E6 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDHB3Q9Y5E6 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
PCDHB3Q9Y5E6 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDHB3Q9Y5E6 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDHB3Q9Y5E6 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDHB3Q9Y5E6 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.83■□□□□ 0.93
PCDHB3Q9Y5E6 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHB3Q9Y5E6 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDHB3Q9Y5E6 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.83■□□□□ 0.92
PCDHB3Q9Y5E6 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.83■□□□□ 0.92
PCDHB3Q9Y5E6 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 AC004911.1-201ENST00000416316 871 ntBASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 KRT18P14-201ENST00000534205 1250 ntBASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 TERF1P2-201ENST00000583350 1212 ntBASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 NTF6G-201ENST00000591094 616 ntBASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
PCDHB3Q9Y5E6 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHB3Q9Y5E6 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHB3Q9Y5E6 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHB3Q9Y5E6 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHB3Q9Y5E6 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHB3Q9Y5E6 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHB3Q9Y5E6 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.81■□□□□ 0.92
PCDHB3Q9Y5E6 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHB3Q9Y5E6 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHB3Q9Y5E6 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDHB3Q9Y5E6 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHB3Q9Y5E6 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.81■□□□□ 0.92
PCDHB3Q9Y5E6 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDHB3Q9Y5E6 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 AC010141.3-201ENST00000456659 717 ntBASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 AC026310.3-201ENST00000625186 2373 ntBASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDHB3Q9Y5E6 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.79■□□□□ 0.92
PCDHB3Q9Y5E6 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDHB3Q9Y5E6 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms