Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC24.67■■□□□ 1.54
CTDP1Q9Y5B0 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CTDP1Q9Y5B0 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CTDP1Q9Y5B0 AC087742.1-201ENST00000575880 1738 ntBASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 GPX1P1-201ENST00000388829 606 ntBASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 AL355802.2-201ENST00000402069 882 ntBASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 KRT18P20-201ENST00000548986 1279 ntBASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 MAZ-216ENST00000616501 991 ntTSL 5 BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CTDP1Q9Y5B0 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC24.65■■□□□ 1.54
CTDP1Q9Y5B0 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
CTDP1Q9Y5B0 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CTDP1Q9Y5B0 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CTDP1Q9Y5B0 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
CTDP1Q9Y5B0 NCF1B-203ENST00000435988 1254 ntBASIC24.65■■□□□ 1.54
CTDP1Q9Y5B0 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CTDP1Q9Y5B0 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC24.65■■□□□ 1.54
CTDP1Q9Y5B0 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC24.65■■□□□ 1.54
CTDP1Q9Y5B0 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC24.65■■□□□ 1.54
CTDP1Q9Y5B0 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC24.65■■□□□ 1.54
CTDP1Q9Y5B0 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CTDP1Q9Y5B0 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC24.65■■□□□ 1.54
CTDP1Q9Y5B0 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
CTDP1Q9Y5B0 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
CTDP1Q9Y5B0 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CTDP1Q9Y5B0 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC24.64■■□□□ 1.54
CTDP1Q9Y5B0 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CTDP1Q9Y5B0 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
CTDP1Q9Y5B0 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC24.64■■□□□ 1.54
CTDP1Q9Y5B0 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC24.64■■□□□ 1.54
CTDP1Q9Y5B0 DENND3-207ENST00000518347 850 ntTSL 2 BASIC24.64■■□□□ 1.54
CTDP1Q9Y5B0 DUX4L16-201ENST00000555130 1264 ntBASIC24.64■■□□□ 1.54
CTDP1Q9Y5B0 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC24.64■■□□□ 1.54
CTDP1Q9Y5B0 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC24.64■■□□□ 1.54
CTDP1Q9Y5B0 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC24.64■■□□□ 1.53
CTDP1Q9Y5B0 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CTDP1Q9Y5B0 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC24.64■■□□□ 1.53
CTDP1Q9Y5B0 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
CTDP1Q9Y5B0 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTDP1Q9Y5B0 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CTDP1Q9Y5B0 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTDP1Q9Y5B0 COMT-203ENST00000403184 2217 ntTSL 2 BASIC24.63■■□□□ 1.53
CTDP1Q9Y5B0 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CTDP1Q9Y5B0 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTDP1Q9Y5B0 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTDP1Q9Y5B0 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC24.63■■□□□ 1.53
CTDP1Q9Y5B0 AC005181.1-201ENST00000604782 1256 ntBASIC24.63■■□□□ 1.53
CTDP1Q9Y5B0 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTDP1Q9Y5B0 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CTDP1Q9Y5B0 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
CTDP1Q9Y5B0 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CTDP1Q9Y5B0 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CTDP1Q9Y5B0 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CTDP1Q9Y5B0 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CTDP1Q9Y5B0 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
CTDP1Q9Y5B0 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CTDP1Q9Y5B0 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC24.62■■□□□ 1.53
CTDP1Q9Y5B0 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CTDP1Q9Y5B0 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC24.62■■□□□ 1.53
CTDP1Q9Y5B0 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CTDP1Q9Y5B0 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CTDP1Q9Y5B0 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTDP1Q9Y5B0 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC24.61■■□□□ 1.53
CTDP1Q9Y5B0 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC24.61■■□□□ 1.53
CTDP1Q9Y5B0 AC053503.5-201ENST00000601508 636 ntBASIC24.61■■□□□ 1.53
CTDP1Q9Y5B0 AL121832.2-201ENST00000610979 668 ntBASIC24.61■■□□□ 1.53
CTDP1Q9Y5B0 TFG-210ENST00000620299 1289 ntTSL 5 BASIC24.61■■□□□ 1.53
CTDP1Q9Y5B0 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTDP1Q9Y5B0 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTDP1Q9Y5B0 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTDP1Q9Y5B0 AC139530.1-201ENST00000575312 1977 ntBASIC24.61■■□□□ 1.53
CTDP1Q9Y5B0 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTDP1Q9Y5B0 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTDP1Q9Y5B0 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CTDP1Q9Y5B0 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
CTDP1Q9Y5B0 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CTDP1Q9Y5B0 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CTDP1Q9Y5B0 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CTDP1Q9Y5B0 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC24.6■■□□□ 1.53
CTDP1Q9Y5B0 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC24.6■■□□□ 1.53
CTDP1Q9Y5B0 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
CTDP1Q9Y5B0 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC24.6■■□□□ 1.53
CTDP1Q9Y5B0 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC24.6■■□□□ 1.53
CTDP1Q9Y5B0 EEF1DP3-203ENST00000566025 782 ntBASIC24.6■■□□□ 1.53
CTDP1Q9Y5B0 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC24.6■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms