Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
TRIM39Q9HCM9 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM39Q9HCM9 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
TRIM39Q9HCM9 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.14■□□□□ 0.97
TRIM39Q9HCM9 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM39Q9HCM9 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.14■□□□□ 0.97
TRIM39Q9HCM9 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.14■□□□□ 0.97
TRIM39Q9HCM9 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.14■□□□□ 0.97
TRIM39Q9HCM9 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.14■□□□□ 0.97
TRIM39Q9HCM9 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
TRIM39Q9HCM9 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.14■□□□□ 0.97
TRIM39Q9HCM9 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM39Q9HCM9 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM39Q9HCM9 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM39Q9HCM9 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 AP004607.4-201ENST00000530158 1459 ntBASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM39Q9HCM9 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
TRIM39Q9HCM9 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 ECEL1P1-201ENST00000373592 1742 ntBASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 AC104564.3-201ENST00000582367 638 ntBASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM39Q9HCM9 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 KRT87P-202ENST00000534226 1464 ntBASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM39Q9HCM9 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM39Q9HCM9 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.08■□□□□ 0.97
TRIM39Q9HCM9 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM39Q9HCM9 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms