Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
VRK1Q99986 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VRK1Q99986 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VRK1Q99986 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.72■□□□□ 0.59
VRK1Q99986 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC18.72■□□□□ 0.59
VRK1Q99986 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK1Q99986 AL121603.2-201ENST00000557373 2117 ntBASIC18.71■□□□□ 0.59
VRK1Q99986 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK1Q99986 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK1Q99986 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK1Q99986 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
VRK1Q99986 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK1Q99986 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
VRK1Q99986 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VRK1Q99986 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.71■□□□□ 0.59
VRK1Q99986 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.71■□□□□ 0.59
VRK1Q99986 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VRK1Q99986 AC105233.4-201ENST00000642045 216 ntBASIC18.71■□□□□ 0.59
VRK1Q99986 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK1Q99986 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VRK1Q99986 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK1Q99986 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK1Q99986 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK1Q99986 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK1Q99986 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VRK1Q99986 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
VRK1Q99986 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VRK1Q99986 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VRK1Q99986 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
VRK1Q99986 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VRK1Q99986 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VRK1Q99986 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VRK1Q99986 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VRK1Q99986 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VRK1Q99986 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.7■□□□□ 0.58
VRK1Q99986 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VRK1Q99986 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC18.7■□□□□ 0.58
VRK1Q99986 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VRK1Q99986 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VRK1Q99986 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
VRK1Q99986 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VRK1Q99986 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VRK1Q99986 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VRK1Q99986 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.69■□□□□ 0.58
VRK1Q99986 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.69■□□□□ 0.58
VRK1Q99986 AC027612.3-201ENST00000413684 1047 ntBASIC18.69■□□□□ 0.58
VRK1Q99986 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VRK1Q99986 AC087239.1-201ENST00000622671 572 ntBASIC18.69■□□□□ 0.58
VRK1Q99986 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.69■□□□□ 0.58
VRK1Q99986 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VRK1Q99986 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VRK1Q99986 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VRK1Q99986 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
VRK1Q99986 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
VRK1Q99986 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VRK1Q99986 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VRK1Q99986 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC18.69■□□□□ 0.58
VRK1Q99986 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.68■□□□□ 0.58
VRK1Q99986 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
VRK1Q99986 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VRK1Q99986 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VRK1Q99986 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VRK1Q99986 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
VRK1Q99986 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.68■□□□□ 0.58
VRK1Q99986 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.68■□□□□ 0.58
VRK1Q99986 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.68■□□□□ 0.58
VRK1Q99986 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VRK1Q99986 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.68■□□□□ 0.58
VRK1Q99986 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.68■□□□□ 0.58
VRK1Q99986 GCA-201ENST00000233612 1694 ntTSL 2 BASIC18.68■□□□□ 0.58
VRK1Q99986 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.68■□□□□ 0.58
VRK1Q99986 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VRK1Q99986 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC18.68■□□□□ 0.58
VRK1Q99986 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VRK1Q99986 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VRK1Q99986 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VRK1Q99986 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.68■□□□□ 0.58
VRK1Q99986 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VRK1Q99986 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VRK1Q99986 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK1Q99986 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VRK1Q99986 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
VRK1Q99986 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VRK1Q99986 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK1Q99986 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.67■□□□□ 0.58
VRK1Q99986 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.67■□□□□ 0.58
VRK1Q99986 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VRK1Q99986 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VRK1Q99986 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.67■□□□□ 0.58
VRK1Q99986 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VRK1Q99986 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VRK1Q99986 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.67■□□□□ 0.58
VRK1Q99986 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.67■□□□□ 0.58
VRK1Q99986 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.67■□□□□ 0.58
VRK1Q99986 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.67■□□□□ 0.58
VRK1Q99986 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VRK1Q99986 AL031602.1-201ENST00000633169 911 ntBASIC18.67■□□□□ 0.58
VRK1Q99986 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.67■□□□□ 0.58
VRK1Q99986 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VRK1Q99986 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms