Protein–RNA interactions for Protein: Q96L12

CALR3, Calreticulin-3, humanhuman

Known RBP Predictions only

Length 384 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CALR3Q96L12 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC22.53■■□□□ 1.2
CALR3Q96L12 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CALR3Q96L12 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC22.52■■□□□ 1.2
CALR3Q96L12 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CALR3Q96L12 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC22.52■■□□□ 1.2
CALR3Q96L12 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
CALR3Q96L12 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
CALR3Q96L12 PARN-205ENST00000539279 1557 ntTSL 2 BASIC22.52■■□□□ 1.2
CALR3Q96L12 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CALR3Q96L12 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC22.52■■□□□ 1.2
CALR3Q96L12 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CALR3Q96L12 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CALR3Q96L12 GRAMD4P7-201ENST00000578182 1232 ntBASIC22.52■■□□□ 1.2
CALR3Q96L12 AC011298.3-201ENST00000615796 283 ntBASIC22.52■■□□□ 1.2
CALR3Q96L12 AC136469.2-201ENST00000623944 1028 ntBASIC22.52■■□□□ 1.2
CALR3Q96L12 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CALR3Q96L12 AC073130.3-201ENST00000624389 2278 ntBASIC22.52■■□□□ 1.2
CALR3Q96L12 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
CALR3Q96L12 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC22.52■■□□□ 1.2
CALR3Q96L12 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CALR3Q96L12 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CALR3Q96L12 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.19
CALR3Q96L12 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
CALR3Q96L12 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CALR3Q96L12 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC22.51■■□□□ 1.19
CALR3Q96L12 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CALR3Q96L12 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CALR3Q96L12 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
CALR3Q96L12 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CALR3Q96L12 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CALR3Q96L12 PTCHD3P2-201ENST00000424937 1205 ntBASIC22.51■■□□□ 1.19
CALR3Q96L12 QDPR-206ENST00000508623 601 ntTSL 3 BASIC22.51■■□□□ 1.19
CALR3Q96L12 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CALR3Q96L12 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CALR3Q96L12 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CALR3Q96L12 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
CALR3Q96L12 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC22.5■■□□□ 1.19
CALR3Q96L12 SYT6-210ENST00000641643 1587 ntBASIC22.5■■□□□ 1.19
CALR3Q96L12 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CALR3Q96L12 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CALR3Q96L12 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CALR3Q96L12 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CALR3Q96L12 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
CALR3Q96L12 AC010525.1-201ENST00000585559 441 ntBASIC22.5■■□□□ 1.19
CALR3Q96L12 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CALR3Q96L12 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CALR3Q96L12 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC22.5■■□□□ 1.19
CALR3Q96L12 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
CALR3Q96L12 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC22.5■■□□□ 1.19
CALR3Q96L12 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
CALR3Q96L12 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CALR3Q96L12 AF106564.1-201ENST00000607058 2553 ntBASIC22.49■■□□□ 1.19
CALR3Q96L12 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
CALR3Q96L12 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CALR3Q96L12 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CALR3Q96L12 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC22.49■■□□□ 1.19
CALR3Q96L12 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC22.49■■□□□ 1.19
CALR3Q96L12 TRIR-205ENST00000592273 783 ntTSL 3 BASIC22.49■■□□□ 1.19
CALR3Q96L12 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CALR3Q96L12 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CALR3Q96L12 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CALR3Q96L12 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CALR3Q96L12 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CALR3Q96L12 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CALR3Q96L12 AP004607.7-201ENST00000527152 1677 ntBASIC22.49■■□□□ 1.19
CALR3Q96L12 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
CALR3Q96L12 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CALR3Q96L12 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC22.48■■□□□ 1.19
CALR3Q96L12 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CALR3Q96L12 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC22.48■■□□□ 1.19
CALR3Q96L12 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
CALR3Q96L12 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
CALR3Q96L12 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CALR3Q96L12 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.48■■□□□ 1.19
CALR3Q96L12 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC22.48■■□□□ 1.19
CALR3Q96L12 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.48■■□□□ 1.19
CALR3Q96L12 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CALR3Q96L12 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CALR3Q96L12 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CALR3Q96L12 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CALR3Q96L12 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.47■■□□□ 1.19
CALR3Q96L12 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CALR3Q96L12 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CALR3Q96L12 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
CALR3Q96L12 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CALR3Q96L12 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
CALR3Q96L12 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CALR3Q96L12 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC22.46■■□□□ 1.19
CALR3Q96L12 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC22.46■■□□□ 1.19
CALR3Q96L12 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
CALR3Q96L12 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CALR3Q96L12 SERBP1P1-201ENST00000396021 1160 ntBASIC22.46■■□□□ 1.19
CALR3Q96L12 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
CALR3Q96L12 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.46■■□□□ 1.19
CALR3Q96L12 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC22.46■■□□□ 1.19
CALR3Q96L12 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC22.46■■□□□ 1.19
CALR3Q96L12 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC22.46■■□□□ 1.19
CALR3Q96L12 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CALR3Q96L12 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
CALR3Q96L12 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms