Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
USHBP1Q8N6Y0 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
USHBP1Q8N6Y0 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
USHBP1Q8N6Y0 AC013268.1-206ENST00000638368 961 ntBASIC28.33■■■□□ 2.13
USHBP1Q8N6Y0 AC112229.1-201ENST00000639295 961 ntBASIC28.33■■■□□ 2.13
USHBP1Q8N6Y0 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
USHBP1Q8N6Y0 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
USHBP1Q8N6Y0 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
USHBP1Q8N6Y0 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
USHBP1Q8N6Y0 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
USHBP1Q8N6Y0 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
USHBP1Q8N6Y0 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
USHBP1Q8N6Y0 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
USHBP1Q8N6Y0 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC28.32■■■□□ 2.12
USHBP1Q8N6Y0 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC28.32■■■□□ 2.12
USHBP1Q8N6Y0 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC28.32■■■□□ 2.12
USHBP1Q8N6Y0 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
USHBP1Q8N6Y0 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
USHBP1Q8N6Y0 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC28.31■■■□□ 2.12
USHBP1Q8N6Y0 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
USHBP1Q8N6Y0 AC093787.1-201ENST00000450396 207 ntBASIC28.31■■■□□ 2.12
USHBP1Q8N6Y0 PHB2-213ENST00000546111 858 ntTSL 2 BASIC28.31■■■□□ 2.12
USHBP1Q8N6Y0 RGMA-211ENST00000557420 989 ntTSL 3 BASIC28.31■■■□□ 2.12
USHBP1Q8N6Y0 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
USHBP1Q8N6Y0 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC28.31■■■□□ 2.12
USHBP1Q8N6Y0 MARS-234ENST00000630571 216 ntTSL 5 BASIC28.31■■■□□ 2.12
USHBP1Q8N6Y0 MARS-235ENST00000630803 183 ntTSL 3 BASIC28.31■■■□□ 2.12
USHBP1Q8N6Y0 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
USHBP1Q8N6Y0 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
USHBP1Q8N6Y0 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC28.31■■■□□ 2.12
USHBP1Q8N6Y0 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
USHBP1Q8N6Y0 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC28.3■■■□□ 2.12
USHBP1Q8N6Y0 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC28.3■■■□□ 2.12
USHBP1Q8N6Y0 AC066615.1-201ENST00000640911 628 ntBASIC28.3■■■□□ 2.12
USHBP1Q8N6Y0 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC28.3■■■□□ 2.12
USHBP1Q8N6Y0 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
USHBP1Q8N6Y0 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
USHBP1Q8N6Y0 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
USHBP1Q8N6Y0 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
USHBP1Q8N6Y0 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
USHBP1Q8N6Y0 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC28.29■■■□□ 2.12
USHBP1Q8N6Y0 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC28.29■■■□□ 2.12
USHBP1Q8N6Y0 AC133041.1-202ENST00000642053 222 ntBASIC28.29■■■□□ 2.12
USHBP1Q8N6Y0 AC093323.1-202ENST00000635031 2045 ntBASIC28.29■■■□□ 2.12
USHBP1Q8N6Y0 GCA-201ENST00000233612 1694 ntTSL 2 BASIC28.29■■■□□ 2.12
USHBP1Q8N6Y0 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC28.29■■■□□ 2.12
USHBP1Q8N6Y0 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
USHBP1Q8N6Y0 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
USHBP1Q8N6Y0 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
USHBP1Q8N6Y0 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
USHBP1Q8N6Y0 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC28.28■■■□□ 2.12
USHBP1Q8N6Y0 SLC7A5P1-201ENST00000568957 537 ntBASIC28.28■■■□□ 2.12
USHBP1Q8N6Y0 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC28.28■■■□□ 2.12
USHBP1Q8N6Y0 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC28.28■■■□□ 2.12
USHBP1Q8N6Y0 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC28.28■■■□□ 2.12
USHBP1Q8N6Y0 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
USHBP1Q8N6Y0 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
USHBP1Q8N6Y0 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
USHBP1Q8N6Y0 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
USHBP1Q8N6Y0 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC28.27■■■□□ 2.12
USHBP1Q8N6Y0 AC016405.3-201ENST00000607710 860 ntBASIC28.27■■■□□ 2.12
USHBP1Q8N6Y0 TBCB-214ENST00000629269 413 ntTSL 5 BASIC28.27■■■□□ 2.12
USHBP1Q8N6Y0 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC28.27■■■□□ 2.12
USHBP1Q8N6Y0 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.12
USHBP1Q8N6Y0 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
USHBP1Q8N6Y0 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
USHBP1Q8N6Y0 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
USHBP1Q8N6Y0 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC28.26■■■□□ 2.11
USHBP1Q8N6Y0 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC28.26■■■□□ 2.11
USHBP1Q8N6Y0 MIPEPP3-201ENST00000412105 444 ntBASIC28.26■■■□□ 2.11
USHBP1Q8N6Y0 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC28.26■■■□□ 2.11
USHBP1Q8N6Y0 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
USHBP1Q8N6Y0 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC28.26■■■□□ 2.11
USHBP1Q8N6Y0 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
USHBP1Q8N6Y0 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
USHBP1Q8N6Y0 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
USHBP1Q8N6Y0 AC139530.1-201ENST00000575312 1977 ntBASIC28.26■■■□□ 2.11
USHBP1Q8N6Y0 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC28.25■■■□□ 2.11
USHBP1Q8N6Y0 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
USHBP1Q8N6Y0 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC28.25■■■□□ 2.11
USHBP1Q8N6Y0 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
USHBP1Q8N6Y0 LTK-203ENST00000453182 2412 ntTSL 2 BASIC28.25■■■□□ 2.11
USHBP1Q8N6Y0 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
USHBP1Q8N6Y0 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 NFE2L3P1-201ENST00000588207 1959 ntBASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 MKRN4P-201ENST00000444706 1521 ntBASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 AC073210.2-201ENST00000430369 194 ntBASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
USHBP1Q8N6Y0 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms