Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 KRT18P5-201ENST00000436075 1291 ntBASIC23.56■■□□□ 1.36
PEX3P56589 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC23.56■■□□□ 1.36
PEX3P56589 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.56■■□□□ 1.36
PEX3P56589 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
PEX3P56589 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
PEX3P56589 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC23.56■■□□□ 1.36
PEX3P56589 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
PEX3P56589 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
PEX3P56589 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PEX3P56589 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
PEX3P56589 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PEX3P56589 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PEX3P56589 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PEX3P56589 COX20-201ENST00000366528 568 ntTSL 2 BASIC23.55■■□□□ 1.36
PEX3P56589 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC23.55■■□□□ 1.36
PEX3P56589 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC23.55■■□□□ 1.36
PEX3P56589 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC23.55■■□□□ 1.36
PEX3P56589 NTF6G-201ENST00000591094 616 ntBASIC23.55■■□□□ 1.36
PEX3P56589 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
PEX3P56589 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PEX3P56589 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.55■■□□□ 1.36
PEX3P56589 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PEX3P56589 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC23.54■■□□□ 1.36
PEX3P56589 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.54■■□□□ 1.36
PEX3P56589 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PEX3P56589 C11orf96-202ENST00000528572 1834 ntBASIC23.54■■□□□ 1.36
PEX3P56589 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
PEX3P56589 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
PEX3P56589 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PEX3P56589 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
PEX3P56589 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC23.54■■□□□ 1.36
PEX3P56589 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PEX3P56589 FXN-202ENST00000396364 980 ntTSL 5 BASIC23.54■■□□□ 1.36
PEX3P56589 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC23.54■■□□□ 1.36
PEX3P56589 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PEX3P56589 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
PEX3P56589 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC23.54■■□□□ 1.36
PEX3P56589 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC23.54■■□□□ 1.36
PEX3P56589 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
PEX3P56589 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PEX3P56589 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
PEX3P56589 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC23.54■■□□□ 1.36
PEX3P56589 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
PEX3P56589 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC23.54■■□□□ 1.36
PEX3P56589 MFF-207ENST00000409565 1548 ntTSL 2 BASIC23.54■■□□□ 1.36
PEX3P56589 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PEX3P56589 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
PEX3P56589 AC003102.1-202ENST00000563394 1796 ntBASIC23.53■■□□□ 1.36
PEX3P56589 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC23.53■■□□□ 1.36
PEX3P56589 AC004854.2-201ENST00000608450 1441 ntBASIC23.53■■□□□ 1.36
PEX3P56589 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.53■■□□□ 1.36
PEX3P56589 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
PEX3P56589 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC23.53■■□□□ 1.36
PEX3P56589 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC23.53■■□□□ 1.36
PEX3P56589 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC23.53■■□□□ 1.36
PEX3P56589 KRT18P61-201ENST00000585825 1298 ntBASIC23.53■■□□□ 1.36
PEX3P56589 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
PEX3P56589 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC23.53■■□□□ 1.36
PEX3P56589 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PEX3P56589 AP004607.4-201ENST00000530158 1459 ntBASIC23.53■■□□□ 1.36
PEX3P56589 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
PEX3P56589 MYB-221ENST00000527615 2381 ntTSL 5 BASIC23.52■■□□□ 1.36
PEX3P56589 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PEX3P56589 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
PEX3P56589 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
PEX3P56589 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC23.52■■□□□ 1.36
PEX3P56589 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.52■■□□□ 1.36
PEX3P56589 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PEX3P56589 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC23.52■■□□□ 1.36
PEX3P56589 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC23.52■■□□□ 1.36
PEX3P56589 AC010542.4-201ENST00000563151 1910 ntBASIC23.52■■□□□ 1.36
PEX3P56589 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PEX3P56589 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
PEX3P56589 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PEX3P56589 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
PEX3P56589 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PEX3P56589 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC23.52■■□□□ 1.35
PEX3P56589 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
PEX3P56589 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
PEX3P56589 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PEX3P56589 KRT87P-202ENST00000534226 1464 ntBASIC23.51■■□□□ 1.35
PEX3P56589 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PEX3P56589 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23.51■■□□□ 1.35
PEX3P56589 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
PEX3P56589 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.51■■□□□ 1.35
PEX3P56589 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
PEX3P56589 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC23.51■■□□□ 1.35
PEX3P56589 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PEX3P56589 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PEX3P56589 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
PEX3P56589 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
PEX3P56589 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC23.51■■□□□ 1.35
PEX3P56589 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
PEX3P56589 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC23.5■■□□□ 1.35
PEX3P56589 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC23.5■■□□□ 1.35
PEX3P56589 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
PEX3P56589 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC23.5■■□□□ 1.35
PEX3P56589 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
PEX3P56589 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
PEX3P56589 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms