Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
MSH6P52701 RNF121-214ENST00000533380 870 ntTSL 3 BASIC29.91■■■□□ 2.38
MSH6P52701 AL162412.1-201ENST00000567129 965 ntBASIC29.91■■■□□ 2.38
MSH6P52701 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC29.91■■■□□ 2.38
MSH6P52701 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
MSH6P52701 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
MSH6P52701 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
MSH6P52701 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC29.91■■■□□ 2.38
MSH6P52701 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
MSH6P52701 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC29.9■■■□□ 2.38
MSH6P52701 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC29.9■■■□□ 2.38
MSH6P52701 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC29.9■■■□□ 2.38
MSH6P52701 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC29.9■■■□□ 2.38
MSH6P52701 AC053503.5-201ENST00000601508 636 ntBASIC29.9■■■□□ 2.38
MSH6P52701 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
MSH6P52701 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC29.9■■■□□ 2.38
MSH6P52701 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC29.9■■■□□ 2.38
MSH6P52701 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
MSH6P52701 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
MSH6P52701 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
MSH6P52701 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC29.9■■■□□ 2.38
MSH6P52701 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
MSH6P52701 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
MSH6P52701 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
MSH6P52701 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC29.9■■■□□ 2.38
MSH6P52701 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
MSH6P52701 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
MSH6P52701 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC29.9■■■□□ 2.38
MSH6P52701 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC29.9■■■□□ 2.38
MSH6P52701 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC29.9■■■□□ 2.38
MSH6P52701 LINC01023-201ENST00000606054 436 ntBASIC29.9■■■□□ 2.38
MSH6P52701 AC138932.3-201ENST00000567634 1902 ntBASIC29.89■■■□□ 2.38
MSH6P52701 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
MSH6P52701 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
MSH6P52701 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC29.89■■■□□ 2.38
MSH6P52701 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC29.89■■■□□ 2.37
MSH6P52701 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC29.89■■■□□ 2.37
MSH6P52701 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.37
MSH6P52701 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC29.88■■■□□ 2.37
MSH6P52701 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
MSH6P52701 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
MSH6P52701 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
MSH6P52701 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC29.88■■■□□ 2.37
MSH6P52701 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC29.88■■■□□ 2.37
MSH6P52701 AC008403.3-201ENST00000598924 454 ntBASIC29.88■■■□□ 2.37
MSH6P52701 FAM197Y4-202ENST00000622692 608 ntBASIC29.88■■■□□ 2.37
MSH6P52701 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC29.88■■■□□ 2.37
MSH6P52701 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC29.88■■■□□ 2.37
MSH6P52701 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC29.87■■■□□ 2.37
MSH6P52701 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
MSH6P52701 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC29.87■■■□□ 2.37
MSH6P52701 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
MSH6P52701 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC29.87■■■□□ 2.37
MSH6P52701 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC29.87■■■□□ 2.37
MSH6P52701 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
MSH6P52701 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
MSH6P52701 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC29.86■■■□□ 2.37
MSH6P52701 MED17-227ENST00000640521 2047 ntTSL 5 BASIC29.86■■■□□ 2.37
MSH6P52701 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
MSH6P52701 AP004607.7-201ENST00000527152 1677 ntBASIC29.86■■■□□ 2.37
MSH6P52701 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC29.86■■■□□ 2.37
MSH6P52701 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
MSH6P52701 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
MSH6P52701 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
MSH6P52701 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
MSH6P52701 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
MSH6P52701 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC29.85■■■□□ 2.37
MSH6P52701 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
MSH6P52701 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC29.85■■■□□ 2.37
MSH6P52701 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC29.85■■■□□ 2.37
MSH6P52701 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC29.85■■■□□ 2.37
MSH6P52701 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC29.85■■■□□ 2.37
MSH6P52701 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
MSH6P52701 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
MSH6P52701 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC29.84■■■□□ 2.37
MSH6P52701 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
MSH6P52701 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
MSH6P52701 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
MSH6P52701 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC29.84■■■□□ 2.37
MSH6P52701 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC29.84■■■□□ 2.37
MSH6P52701 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC29.84■■■□□ 2.37
MSH6P52701 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC29.84■■■□□ 2.37
MSH6P52701 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC29.84■■■□□ 2.37
MSH6P52701 SNORA78-201ENST00000459373 127 ntBASIC29.84■■■□□ 2.37
MSH6P52701 REXO1L12P-201ENST00000622156 912 ntBASIC29.84■■■□□ 2.37
MSH6P52701 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC29.84■■■□□ 2.37
MSH6P52701 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
MSH6P52701 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
MSH6P52701 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC29.83■■■□□ 2.37
MSH6P52701 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
MSH6P52701 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC29.83■■■□□ 2.37
MSH6P52701 RPPH1-201ENST00000516869 333 ntBASIC29.83■■■□□ 2.37
MSH6P52701 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC29.83■■■□□ 2.37
MSH6P52701 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC29.83■■■□□ 2.37
MSH6P52701 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC29.83■■■□□ 2.37
MSH6P52701 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC29.83■■■□□ 2.37
MSH6P52701 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
MSH6P52701 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC29.83■■■□□ 2.37
MSH6P52701 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC29.83■■■□□ 2.37
MSH6P52701 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms